Click here to switch to the map view.

The map label for this gene is aglA [H]

Identifier: 119715022

GI number: 119715022

Start: 818332

End: 819936

Strand: Reverse

Name: aglA [H]

Synonym: Noca_0775

Alternate gene names: 119715022

Gene position: 819936-818332 (Counterclockwise)

Preceding gene: 119715023

Following gene: 119715014

Centisome position: 16.45

GC content: 71.9

Gene sequence:

>1605_bases
ATGGATTTGAACGATCAAACCCACGGTGCGGGACCGGAGTGGTGGCGGCACGCGGTGACCTACCAGATCTACGTCCGCAG
CTTCGCGGACGCCGACGGCGACGGCATCGGCGACCTGTCCGGGATCACCGCGCGCCTCGAGCACGTCCGCGACCTGGGCG
TCGACGCGATCTGGCTGAACCCGTTCTACGTGTCCCCCCAGCGCGACGCCGGGTACGACGTCGCCGACTACTGCGACATC
GACCCGCTGTTCGGCACGCTGGCCGACGCCGACGCCATGGTCGAGCGCGCACACGAGTTGGGCCTGCGGGTGATCGTCGA
CCTGGTCCCCAACCACACCTCCAGCGAGCACGCGTGGTTCCAGAAGGCCCTCGCCGCCGGCCCGGGCAGCCCCGAGCGCG
ACCGCTACCTGTTCCGCGACAGCCCGGACGGGCCGCCGAACAACTGGAAGTCCGTCTTCGGCGGGCCCGCGTGGACCCAG
GTGGCGGACGGCCAGTGGTACCTCCATCTCTTCGACTCCACCCAGCCGGACCTGAACTGGCGCAACCCCGAGGTCGGCGA
CATGTTCGTCGACGTGCTGCGGTTCTGGTTGGACCGCGGTGTCGACGGCTTCCGCGTCGACGTCGCCCACGGGCTGTTCA
AGGAGGAGACCCTGCGCGACCAGGTGGTCCCCGAGGGAGTCGAGTCCGCGACCGGGGCGTCCGCCGGCGAGTCCGGGGGC
GAGTCGATGGTCGAGCGCACCGAGGCCGACGAGCCGATGTGGGACCAGCCCGAGGTGCACGAGGTCTACCGGCGTTGGCA
CGAGGTGCTCGCGAAGTACGACGGCGACCGGATGATGGTCGCCGAGGCCTGGACCCAGAGCCCCGAGTCGATGGCCCGCT
ACATCCGCGCCGACGAGTTCAGCCAGGCCTTCAACTTCGCCTGGCTGCTGGCACCCTGGTCGGCGAAGGCGTTCGCCGAG
GTGATCACCGGGACCTTCGAGGCCGTCGACCAGGTCGACGCCTCCCCCACGTGGGTGCTCTCCAACCACGACGTCGACCG
GCACCCGAGCCGGTACGGCGGTGGCGCGACCGGGCTGGCCCGCGCCCGGGCGGCCACCCTCACCATGCTGGCGCTGCCGG
GCTCGGCGTACCTCTATCAGGGCGAGGAGCTCGGCCTGGAGCAGGTCGAGGTCGAGCCGGAGTTCCGGCAGGACCCGCTG
TGGTTCCGCACCGGCAATCCCGGCCGGGACGGCTGCCGGGTGCCGATGCCGTGGAGCGGCGCGGAGCCGCCGTTCGGGTT
CGGGCCCGGCGCCGGCCAGCCGTGGATCCCGCAGCCGGCCGAGTGGTCGGGGCTCACCGTCGAGGCCCAGACCGCCGACC
CCGTGTCCACGCTCTCGTTCTATCGGGCGGCGCTGGCGGCCCGGCGTACCTTCTCGGAGACCGCGGGCGAGGAGGTCGAG
ATGGTCGAGGCCGGGACGGACGTGCTGTCCTTCCGCCGCGGCCCGATCACCGTCGTGCTCAACTGCAGCACCGAGGCCGT
CGGGCTGCCGGCCGGCGAGGTGCTGATGGCCAGCGGGCCGGTGAACGGGAGCCTGCCCCCGGACACCGCAGTCTGGCTGC
GCTGA

Upstream 100 bases:

>100_bases
ACGCTGTACGACGCCGACGGCCGGGTGGTCGCCCGCGCCGAGCACCTGTGGGTGGCCGTGGATCCCGCGGACCTCTGAGG
CCTCCACTAGGATGGCCGGC

Downstream 100 bases:

>100_bases
CGCTCGCGGGTCGGCCCGGGCGAGCGGTGTCCAGGCAACCTGATCCGAGCCGCAGACGGTTGCTGACGCACCGCCGGCCC
CGCCCCGGACGACCTGCTCA

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MDLNDQTHGAGPEWWRHAVTYQIYVRSFADADGDGIGDLSGITARLEHVRDLGVDAIWLNPFYVSPQRDAGYDVADYCDI
DPLFGTLADADAMVERAHELGLRVIVDLVPNHTSSEHAWFQKALAAGPGSPERDRYLFRDSPDGPPNNWKSVFGGPAWTQ
VADGQWYLHLFDSTQPDLNWRNPEVGDMFVDVLRFWLDRGVDGFRVDVAHGLFKEETLRDQVVPEGVESATGASAGESGG
ESMVERTEADEPMWDQPEVHEVYRRWHEVLAKYDGDRMMVAEAWTQSPESMARYIRADEFSQAFNFAWLLAPWSAKAFAE
VITGTFEAVDQVDASPTWVLSNHDVDRHPSRYGGGATGLARARAATLTMLALPGSAYLYQGEELGLEQVEVEPEFRQDPL
WFRTGNPGRDGCRVPMPWSGAEPPFGFGPGAGQPWIPQPAEWSGLTVEAQTADPVSTLSFYRAALAARRTFSETAGEEVE
MVEAGTDVLSFRRGPITVVLNCSTEAVGLPAGEVLMASGPVNGSLPPDTAVWLR

Sequences:

>Translated_534_residues
MDLNDQTHGAGPEWWRHAVTYQIYVRSFADADGDGIGDLSGITARLEHVRDLGVDAIWLNPFYVSPQRDAGYDVADYCDI
DPLFGTLADADAMVERAHELGLRVIVDLVPNHTSSEHAWFQKALAAGPGSPERDRYLFRDSPDGPPNNWKSVFGGPAWTQ
VADGQWYLHLFDSTQPDLNWRNPEVGDMFVDVLRFWLDRGVDGFRVDVAHGLFKEETLRDQVVPEGVESATGASAGESGG
ESMVERTEADEPMWDQPEVHEVYRRWHEVLAKYDGDRMMVAEAWTQSPESMARYIRADEFSQAFNFAWLLAPWSAKAFAE
VITGTFEAVDQVDASPTWVLSNHDVDRHPSRYGGGATGLARARAATLTMLALPGSAYLYQGEELGLEQVEVEPEFRQDPL
WFRTGNPGRDGCRVPMPWSGAEPPFGFGPGAGQPWIPQPAEWSGLTVEAQTADPVSTLSFYRAALAARRTFSETAGEEVE
MVEAGTDVLSFRRGPITVVLNCSTEAVGLPAGEVLMASGPVNGSLPPDTAVWLR
>Mature_534_residues
MDLNDQTHGAGPEWWRHAVTYQIYVRSFADADGDGIGDLSGITARLEHVRDLGVDAIWLNPFYVSPQRDAGYDVADYCDI
DPLFGTLADADAMVERAHELGLRVIVDLVPNHTSSEHAWFQKALAAGPGSPERDRYLFRDSPDGPPNNWKSVFGGPAWTQ
VADGQWYLHLFDSTQPDLNWRNPEVGDMFVDVLRFWLDRGVDGFRVDVAHGLFKEETLRDQVVPEGVESATGASAGESGG
ESMVERTEADEPMWDQPEVHEVYRRWHEVLAKYDGDRMMVAEAWTQSPESMARYIRADEFSQAFNFAWLLAPWSAKAFAE
VITGTFEAVDQVDASPTWVLSNHDVDRHPSRYGGGATGLARARAATLTMLALPGSAYLYQGEELGLEQVEVEPEFRQDPL
WFRTGNPGRDGCRVPMPWSGAEPPFGFGPGAGQPWIPQPAEWSGLTVEAQTADPVSTLSFYRAALAARRTFSETAGEEVE
MVEAGTDVLSFRRGPITVVLNCSTEAVGLPAGEVLMASGPVNGSLPPDTAVWLR

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=477, Percent_Identity=29.979035639413, Blast_Score=226, Evalue=4e-59,
Organism=Escherichia coli, GI1790687, Length=542, Percent_Identity=35.239852398524, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1786604, Length=425, Percent_Identity=23.7647058823529, Blast_Score=86, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI32565753, Length=514, Percent_Identity=24.5136186770428, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI25147709, Length=488, Percent_Identity=24.5901639344262, Blast_Score=100, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6321731, Length=553, Percent_Identity=32.1880650994575, Blast_Score=278, Evalue=2e-75,
Organism=Saccharomyces cerevisiae, GI6319776, Length=553, Percent_Identity=32.1880650994575, Blast_Score=278, Evalue=2e-75,
Organism=Saccharomyces cerevisiae, GI6321726, Length=557, Percent_Identity=32.8545780969479, Blast_Score=275, Evalue=1e-74,
Organism=Saccharomyces cerevisiae, GI6322245, Length=534, Percent_Identity=32.9588014981273, Blast_Score=270, Evalue=6e-73,
Organism=Saccharomyces cerevisiae, GI6322241, Length=558, Percent_Identity=32.4372759856631, Blast_Score=264, Evalue=3e-71,
Organism=Saccharomyces cerevisiae, GI6322021, Length=558, Percent_Identity=32.4372759856631, Blast_Score=264, Evalue=3e-71,
Organism=Saccharomyces cerevisiae, GI6324416, Length=557, Percent_Identity=32.3159784560144, Blast_Score=263, Evalue=4e-71,
Organism=Drosophila melanogaster, GI24586599, Length=526, Percent_Identity=34.2205323193916, Blast_Score=269, Evalue=4e-72,
Organism=Drosophila melanogaster, GI24586587, Length=503, Percent_Identity=34.3936381709742, Blast_Score=268, Evalue=1e-71,
Organism=Drosophila melanogaster, GI24583747, Length=545, Percent_Identity=34.6788990825688, Blast_Score=267, Evalue=2e-71,
Organism=Drosophila melanogaster, GI24583749, Length=545, Percent_Identity=34.6788990825688, Blast_Score=266, Evalue=2e-71,
Organism=Drosophila melanogaster, GI24586597, Length=526, Percent_Identity=34.6007604562738, Blast_Score=265, Evalue=7e-71,
Organism=Drosophila melanogaster, GI24586591, Length=505, Percent_Identity=34.8514851485148, Blast_Score=264, Evalue=9e-71,
Organism=Drosophila melanogaster, GI24583745, Length=513, Percent_Identity=34.1130604288499, Blast_Score=264, Evalue=1e-70,
Organism=Drosophila melanogaster, GI24586589, Length=525, Percent_Identity=34.2857142857143, Blast_Score=257, Evalue=1e-68,
Organism=Drosophila melanogaster, GI24586593, Length=510, Percent_Identity=34.3137254901961, Blast_Score=257, Evalue=2e-68,
Organism=Drosophila melanogaster, GI221330053, Length=561, Percent_Identity=31.9073083778966, Blast_Score=248, Evalue=9e-66,
Organism=Drosophila melanogaster, GI45549022, Length=529, Percent_Identity=31.758034026465, Blast_Score=248, Evalue=9e-66,
Organism=Drosophila melanogaster, GI281360393, Length=449, Percent_Identity=32.0712694877506, Blast_Score=186, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.20 [H]

Molecular weight: Translated: 58850; Mature: 58850

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNDQTHGAGPEWWRHAVTYQIYVRSFADADGDGIGDLSGITARLEHVRDLGVDAIWLN
CCCCCCCCCCCHHHHHHHHEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
PFYVSPQRDAGYDVADYCDIDPLFGTLADADAMVERAHELGLRVIVDLVPNHTSSEHAWF
CEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
QKALAAGPGSPERDRYLFRDSPDGPPNNWKSVFGGPAWTQVADGQWYLHLFDSTQPDLNW
HHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEECCCEEEEEEECCCCCCCCC
RNPEVGDMFVDVLRFWLDRGVDGFRVDVAHGLFKEETLRDQVVPEGVESATGASAGESGG
CCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
ESMVERTEADEPMWDQPEVHEVYRRWHEVLAKYDGDRMMVAEAWTQSPESMARYIRADEF
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHH
SQAFNFAWLLAPWSAKAFAEVITGTFEAVDQVDASPTWVLSNHDVDRHPSRYGGGATGLA
HHHHCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHH
RARAATLTMLALPGSAYLYQGEELGLEQVEVEPEFRQDPLWFRTGNPGRDGCRVPMPWSG
HHHHHEEEEEECCCCCEEECCHHCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCC
AEPPFGFGPGAGQPWIPQPAEWSGLTVEAQTADPVSTLSFYRAALAARRTFSETAGEEVE
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
MVEAGTDVLSFRRGPITVVLNCSTEAVGLPAGEVLMASGPVNGSLPPDTAVWLR
EHHHCCHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLNDQTHGAGPEWWRHAVTYQIYVRSFADADGDGIGDLSGITARLEHVRDLGVDAIWLN
CCCCCCCCCCCHHHHHHHHEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
PFYVSPQRDAGYDVADYCDIDPLFGTLADADAMVERAHELGLRVIVDLVPNHTSSEHAWF
CEEECCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH
QKALAAGPGSPERDRYLFRDSPDGPPNNWKSVFGGPAWTQVADGQWYLHLFDSTQPDLNW
HHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEECCCEEEEEEECCCCCCCCC
RNPEVGDMFVDVLRFWLDRGVDGFRVDVAHGLFKEETLRDQVVPEGVESATGASAGESGG
CCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
ESMVERTEADEPMWDQPEVHEVYRRWHEVLAKYDGDRMMVAEAWTQSPESMARYIRADEF
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHH
SQAFNFAWLLAPWSAKAFAEVITGTFEAVDQVDASPTWVLSNHDVDRHPSRYGGGATGLA
HHHHCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHH
RARAATLTMLALPGSAYLYQGEELGLEQVEVEPEFRQDPLWFRTGNPGRDGCRVPMPWSG
HHHHHEEEEEECCCCCEEECCHHCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCC
AEPPFGFGPGAGQPWIPQPAEWSGLTVEAQTADPVSTLSFYRAALAARRTFSETAGEEVE
CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
MVEAGTDVLSFRRGPITVVLNCSTEAVGLPAGEVLMASGPVNGSLPPDTAVWLR
EHHHCCHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10400573; 11481430 [H]