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The map label for this gene is fliA [H]

Identifier: 119715014

GI number: 119715014

Start: 811368

End: 812225

Strand: Reverse

Name: fliA [H]

Synonym: Noca_0767

Alternate gene names: 119715014

Gene position: 812225-811368 (Counterclockwise)

Preceding gene: 119715022

Following gene: 119715013

Centisome position: 16.29

GC content: 73.54

Gene sequence:

>858_bases
GTGAACGCGCACACCGTGACGCCTGAACTCGAGGCGCTGATCCTCCAGCACACCGCCCTGGTCGGACACATCGTCCGCGA
GACCATGTCGCGGGTCCCCGCGCACGTGGATCGCGACGACCTGACCTCCGCCGGGCTGCTGGCGCTCGTGCAAGCCGCGC
AGGCGTTCGACGCCGAGCGCGGGGTGCCGTTCAACCGCTACGCCGCTACCCGCGTCCGCGGCGCGGTCGTCGACGAGCTG
CGCCGCACCGACTGGGCCTCCCGGTCGGTGCGGCGCCGGGCCCGGGAGCTCGACGCGACCCGGTCCCGGCTCGCGACCGT
GCTCGGCCGGCCGGCCACCCAGGCCGAGGTGGCCGACACGGCCGGGCTGAGCGTCGACGAGGTCACCGGCAACGACGACG
ACATCGCCCGCGCCCAGGTGCTCTCCTTGGACGCCTCCGAGGACGACGGCATCGGCGACACCCTGGTCGGCAATGCGCCC
GACCCCCAGGGGGCGCTCGAGCACGGTGAGCGGCTGACGTACCTGACCGAGGCGGTGGCCGAGCTGCCCGACCGGCTGCG
CCTGGTCGTCGAGCAGTACTTCCTCAACGAACGGCCGATGGCCGAGATCGCGGCCACCCTCGGCGTCACCGAGTCACGGA
TCTCGCAGTTGCGCGCGGAAGCACTGGTCCTGCTGCGCGACGCCCTCAACCACGAGCTGGACCCGGACCTGCTGCCGGCG
CCCAGCCGGCCGAACGGTGCCGCTACGAGGCGCCGGGAGTCCTACTTCGCGGCCGTCGCTGCCCGGCACACCGCCGGCCT
GCGCCGGGTCGTCATCGACGCCGAGGTGGCGAACGAGTCGGTGAACGTCTCGGCGTAG

Upstream 100 bases:

>100_bases
TCTCGGCGTGTCGCTCTTGCCCGGGATGGCCCACTTCGGCTATGAGGTCGGGACTTTCGTCACGCGTCAACTACCCGCCG
GTAATGGGAGACTGCGTCAT

Downstream 100 bases:

>100_bases
CCGCCATGCTCGGCGTGACCTCCATCCCTGAGGCGGCGGGTCAGGAAAATTCCCGAAATTCCTGGCCCGACCGCCTCAGG
CCGTTCCTGGATCTGCCGAA

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-27; Sigma-28; Sigma-F factor [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNAHTVTPELEALILQHTALVGHIVRETMSRVPAHVDRDDLTSAGLLALVQAAQAFDAERGVPFNRYAATRVRGAVVDEL
RRTDWASRSVRRRARELDATRSRLATVLGRPATQAEVADTAGLSVDEVTGNDDDIARAQVLSLDASEDDGIGDTLVGNAP
DPQGALEHGERLTYLTEAVAELPDRLRLVVEQYFLNERPMAEIAATLGVTESRISQLRAEALVLLRDALNHELDPDLLPA
PSRPNGAATRRRESYFAAVAARHTAGLRRVVIDAEVANESVNVSA

Sequences:

>Translated_285_residues
MNAHTVTPELEALILQHTALVGHIVRETMSRVPAHVDRDDLTSAGLLALVQAAQAFDAERGVPFNRYAATRVRGAVVDEL
RRTDWASRSVRRRARELDATRSRLATVLGRPATQAEVADTAGLSVDEVTGNDDDIARAQVLSLDASEDDGIGDTLVGNAP
DPQGALEHGERLTYLTEAVAELPDRLRLVVEQYFLNERPMAEIAATLGVTESRISQLRAEALVLLRDALNHELDPDLLPA
PSRPNGAATRRRESYFAAVAARHTAGLRRVVIDAEVANESVNVSA
>Mature_285_residues
MNAHTVTPELEALILQHTALVGHIVRETMSRVPAHVDRDDLTSAGLLALVQAAQAFDAERGVPFNRYAATRVRGAVVDEL
RRTDWASRSVRRRARELDATRSRLATVLGRPATQAEVADTAGLSVDEVTGNDDDIARAQVLSLDASEDDGIGDTLVGNAP
DPQGALEHGERLTYLTEAVAELPDRLRLVVEQYFLNERPMAEIAATLGVTESRISQLRAEALVLLRDALNHELDPDLLPA
PSRPNGAATRRRESYFAAVAARHTAGLRRVVIDAEVANESVNVSA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This alternative sigma factor is specific for the flagellar operon [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=222, Percent_Identity=37.3873873873874, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 30884; Mature: 30884

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHTVTPELEALILQHTALVGHIVRETMSRVPAHVDRDDLTSAGLLALVQAAQAFDAER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GVPFNRYAATRVRGAVVDELRRTDWASRSVRRRARELDATRSRLATVLGRPATQAEVADT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AGLSVDEVTGNDDDIARAQVLSLDASEDDGIGDTLVGNAPDPQGALEHGERLTYLTEAVA
CCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHH
ELPDRLRLVVEQYFLNERPMAEIAATLGVTESRISQLRAEALVLLRDALNHELDPDLLPA
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PSRPNGAATRRRESYFAAVAARHTAGLRRVVIDAEVANESVNVSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCC
>Mature Secondary Structure
MNAHTVTPELEALILQHTALVGHIVRETMSRVPAHVDRDDLTSAGLLALVQAAQAFDAER
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GVPFNRYAATRVRGAVVDELRRTDWASRSVRRRARELDATRSRLATVLGRPATQAEVADT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
AGLSVDEVTGNDDDIARAQVLSLDASEDDGIGDTLVGNAPDPQGALEHGERLTYLTEAVA
CCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHH
ELPDRLRLVVEQYFLNERPMAEIAATLGVTESRISQLRAEALVLLRDALNHELDPDLLPA
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PSRPNGAATRRRESYFAAVAARHTAGLRRVVIDAEVANESVNVSA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7730257 [H]