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The map label for this gene is xerD [C]

Identifier: 119714858

GI number: 119714858

Start: 635378

End: 636376

Strand: Reverse

Name: xerD [C]

Synonym: Noca_0601

Alternate gene names: 119714858

Gene position: 636376-635378 (Counterclockwise)

Preceding gene: 119714859

Following gene: 119714857

Centisome position: 12.76

GC content: 67.67

Gene sequence:

>999_bases
ATGACCGCCCCCGCGAAGACGCCGGCGGCGTCGGCGCCGACACCGACGTTGCGTGATCGGCTCGATGAGTACCTGGTGAT
GCGCCGGGCGTTGGGGTTCCAGCTCAACGACGTCGAGCGGCAGGTCGGCCTGTTCTGCACCTGGCTCGAAGCCCGCGGCC
AGACGCAGACGTTCACTATCGATGAGGCGGTGACCTGGGCCCGGCTCAACCCGGACGCGCACCCCTCGTGGTGGGCGACC
CGACTGTCGTTGGTGCGGCGCTTTGCCGGCTACCTGAACGCGAACGACGTCGACGTCCCGGTCATCCCGCGCGGGCTGCT
ACCGGCCCCGAAGCCTCGAGCGGTGCCCTTCATCTACAGCCAACACGACCTCGATGCGCTGCTCACCGCCTGCGACCGAG
TGTTCACTGACGAGCGGATCGCCGCGACGATGCGCACGGTCATTGGGCTGCTTGCCGCGACGGGGCTGCGAATCGGGGAG
GCATTGAAGCTGCGCGTGGGCGACGTCGACCACGTCAACGATCTGTTGGTCATCAAGGCGGCGAAGTCGGTTGAGCGGCT
CGTCCCGCTGCACCCCACGACGACGGCCGCGCTGATGGACTACATCACGTTGCCAGCCCGCACGGCGACCAACCCCGACC
CCGATGGTCCGGTCTTCGTGACCGCCAACGGGACCGGGTACATCTACGTGAGCTTCTACAAGATGTTCCGAGCAGTCCGG
GAGGAAGCCGGACTGACACCGCGTGGGAGAGCACGACCGCGCCTGCACGACCTGAGACACACCTTCGCCACCGCGCACAT
GACCGCGGCCTACGCCCACGACGGTGACCCCGAGCGGGTGTTGTCGCTGCTCGCGACCTGGCTCGGGCACTCCGACGCCA
CCCACACGTACTGGTACCTGTCCGCGACTGGCGAGCTCATGGCCCTGGCCGCCGGCCGCCTTGAACTCAACCCCGAAATC
GGTGCCGACATCGATGCCGGCACAGGAGAGCCCTCATGA

Upstream 100 bases:

>100_bases
AACTGCTGGGCCACGTCTACACCGTCACCACGATGACCTACGCCAAGGTCGACCTTGCCTCGCTACGCGAGCTGGTCGTC
CCGTTCGGACAGGTACCGCG

Downstream 100 bases:

>100_bases
ACGCGCTGGCCGCCAGCTTGCAGACCTACTTCACCACCTTCGCCCGAAGTCAGCGGGACCTGTCGAATCACACGATCGGT
TCCTACCGCGACACGTGGCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTAPAKTPAASAPTPTLRDRLDEYLVMRRALGFQLNDVERQVGLFCTWLEARGQTQTFTIDEAVTWARLNPDAHPSWWAT
RLSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYSQHDLDALLTACDRVFTDERIAATMRTVIGLLAATGLRIGE
ALKLRVGDVDHVNDLLVIKAAKSVERLVPLHPTTTAALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVR
EEAGLTPRGRARPRLHDLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYLSATGELMALAAGRLELNPEI
GADIDAGTGEPS

Sequences:

>Translated_332_residues
MTAPAKTPAASAPTPTLRDRLDEYLVMRRALGFQLNDVERQVGLFCTWLEARGQTQTFTIDEAVTWARLNPDAHPSWWAT
RLSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYSQHDLDALLTACDRVFTDERIAATMRTVIGLLAATGLRIGE
ALKLRVGDVDHVNDLLVIKAAKSVERLVPLHPTTTAALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVR
EEAGLTPRGRARPRLHDLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYLSATGELMALAAGRLELNPEI
GADIDAGTGEPS
>Mature_331_residues
TAPAKTPAASAPTPTLRDRLDEYLVMRRALGFQLNDVERQVGLFCTWLEARGQTQTFTIDEAVTWARLNPDAHPSWWATR
LSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYSQHDLDALLTACDRVFTDERIAATMRTVIGLLAATGLRIGEA
LKLRVGDVDHVNDLLVIKAAKSVERLVPLHPTTTAALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVRE
EAGLTPRGRARPRLHDLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYLSATGELMALAAGRLELNPEIG
ADIDAGTGEPS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36461; Mature: 36330

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPAKTPAASAPTPTLRDRLDEYLVMRRALGFQLNDVERQVGLFCTWLEARGQTQTFTI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCEEEEEH
DEAVTWARLNPDAHPSWWATRLSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYS
HHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
QHDLDALLTACDRVFTDERIAATMRTVIGLLAATGLRIGEALKLRVGDVDHVNDLLVIKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEE
AKSVERLVPLHPTTTAALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVR
HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHH
EEAGLTPRGRARPRLHDLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
SATGELMALAAGRLELNPEIGADIDAGTGEPS
ECCCCEEEHCCCCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAPAKTPAASAPTPTLRDRLDEYLVMRRALGFQLNDVERQVGLFCTWLEARGQTQTFTI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEECCCCCEEEEEH
DEAVTWARLNPDAHPSWWATRLSLVRRFAGYLNANDVDVPVIPRGLLPAPKPRAVPFIYS
HHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
QHDLDALLTACDRVFTDERIAATMRTVIGLLAATGLRIGEALKLRVGDVDHVNDLLVIKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEE
AKSVERLVPLHPTTTAALMDYITLPARTATNPDPDGPVFVTANGTGYIYVSFYKMFRAVR
HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHH
EEAGLTPRGRARPRLHDLRHTFATAHMTAAYAHDGDPERVLSLLATWLGHSDATHTYWYL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
SATGELMALAAGRLELNPEIGADIDAGTGEPS
ECCCCEEEHCCCCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]