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The map label for this gene is xerD [C]

Identifier: 119714857

GI number: 119714857

Start: 634392

End: 635381

Strand: Reverse

Name: xerD [C]

Synonym: Noca_0600

Alternate gene names: 119714857

Gene position: 635381-634392 (Counterclockwise)

Preceding gene: 119714858

Following gene: 119714844

Centisome position: 12.74

GC content: 67.98

Gene sequence:

>990_bases
ATGAACGCGCTGGCCGCCAGCTTGCAGACCTACTTCACCACCTTCGCCCGAAGTCAGCGGGACCTGTCGAATCACACGAT
CGGTTCCTACCGCGACACGTGGCGGATGCTGCTGAAGTACCTGACCACGACACTCGGGGTCAGCGTCGACGCGGTCGACT
TCGACGCCGTCACCGCGACAAACATCACCAGGTTCCTGGACTACCTCGAACACGAGCGCGGCAACAGTGCCAAGACCCGC
AACGTCCGCCTGACCGCGATCCGCGCCGTGCTCGGCCACGCGCTGCCCGATCACCCCGAACACGCTGCAACGATCACCCA
GGTCCTGGCGATCCCGCCCAAACGCACGACCAGACCGGTCATCGAGTTCCTCAGGCCCGACGAGGTCGTCGCCCTCCTCG
CCGCGCCCGACCCGACGACCCGGACGGGGCGACGCGACCACGCGCTGCTGGCCATGACCGTGCAGACCGGTCTTCGCATC
AGCGAGGTCTGCTCACTCACCATCGACGATGTCCACCTCGGCACCGGCCCACACGTCACCTGCACCGGCAAAGGACGGCG
CCGACGCATCACGCCCCTGACGGGCGCGACGGTAAGCGTGATGACGGACTACCTGACCGAGCGGTCCGCCCGGCCCGGGA
CCGCACTGTTCTGCGGTCCCCGCGGTCTGTCCCTGTCCCGCGATGCCCTCGAGCATCGACTTGCCACCCACGTCGCAGCC
GCAGCAGCCGCCTGTCCAAGCCTGACCGGGAAGCACGTCACGATGCACACCCTGCGCCACACCGCAGCGATGAACCTGCT
CGCTGCCGGGGTCGACGTCGCCGTCATCGCGCTGTGGCTCGGGCACGCCGACACCCACAGCACCGATGGCTACCTCCACG
CCGACATGGCCATCAAGCAAGCAGCCCTCGACCGAACCCGACCGCCCGACGTGCAAGCCGGCACCTACCGTCCCGCGCCC
GACATCCTCACCTGGCTCACCGCACTTTGA

Upstream 100 bases:

>100_bases
ACCTGTCCGCGACTGGCGAGCTCATGGCCCTGGCCGCCGGCCGCCTTGAACTCAACCCCGAAATCGGTGCCGACATCGAT
GCCGGCACAGGAGAGCCCTC

Downstream 100 bases:

>100_bases
CTATGCCGACCATCCGGAGCCGAAGGCCGCGCCAGCACAGCCCATCCCCAGCAACATCGGCATAGTTCGAAGGTCGGCAT
AGGACTTCTCCTACGTGTGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MNALAASLQTYFTTFARSQRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTATNITRFLDYLEHERGNSAKTR
NVRLTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPVIEFLRPDEVVALLAAPDPTTRTGRRDHALLAMTVQTGLRI
SEVCSLTIDDVHLGTGPHVTCTGKGRRRRITPLTGATVSVMTDYLTERSARPGTALFCGPRGLSLSRDALEHRLATHVAA
AAAACPSLTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAALDRTRPPDVQAGTYRPAP
DILTWLTAL

Sequences:

>Translated_329_residues
MNALAASLQTYFTTFARSQRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTATNITRFLDYLEHERGNSAKTR
NVRLTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPVIEFLRPDEVVALLAAPDPTTRTGRRDHALLAMTVQTGLRI
SEVCSLTIDDVHLGTGPHVTCTGKGRRRRITPLTGATVSVMTDYLTERSARPGTALFCGPRGLSLSRDALEHRLATHVAA
AAAACPSLTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAALDRTRPPDVQAGTYRPAP
DILTWLTAL
>Mature_329_residues
MNALAASLQTYFTTFARSQRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTATNITRFLDYLEHERGNSAKTR
NVRLTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPVIEFLRPDEVVALLAAPDPTTRTGRRDHALLAMTVQTGLRI
SEVCSLTIDDVHLGTGPHVTCTGKGRRRRITPLTGATVSVMTDYLTERSARPGTALFCGPRGLSLSRDALEHRLATHVAA
AAAACPSLTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAALDRTRPPDVQAGTYRPAP
DILTWLTAL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=27.681660899654, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35710; Mature: 35710

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALAASLQTYFTTFARSQRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTAT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH
NITRFLDYLEHERGNSAKTRNVRLTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPV
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHH
IEFLRPDEVVALLAAPDPTTRTGRRDHALLAMTVQTGLRISEVCSLTIDDVHLGTGPHVT
HHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHEEECCEEECCCCEEE
CTGKGRRRRITPLTGATVSVMTDYLTERSARPGTALFCGPRGLSLSRDALEHRLATHVAA
ECCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
AAAACPSLTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQ
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
AALDRTRPPDVQAGTYRPAPDILTWLTAL
HHHCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MNALAASLQTYFTTFARSQRDLSNHTIGSYRDTWRMLLKYLTTTLGVSVDAVDFDAVTAT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH
NITRFLDYLEHERGNSAKTRNVRLTAIRAVLGHALPDHPEHAATITQVLAIPPKRTTRPV
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHH
IEFLRPDEVVALLAAPDPTTRTGRRDHALLAMTVQTGLRISEVCSLTIDDVHLGTGPHVT
HHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHEEECCEEECCCCEEE
CTGKGRRRRITPLTGATVSVMTDYLTERSARPGTALFCGPRGLSLSRDALEHRLATHVAA
ECCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
AAAACPSLTGKHVTMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQ
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
AALDRTRPPDVQAGTYRPAPDILTWLTAL
HHHCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]