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The map label for this gene is yidL [C]

Identifier: 119386231

GI number: 119386231

Start: 667754

End: 668722

Strand: Direct

Name: yidL [C]

Synonym: Pden_3520

Alternate gene names: 119386231

Gene position: 667754-668722 (Clockwise)

Preceding gene: 119386230

Following gene: 119386233

Centisome position: 38.6

GC content: 67.8

Gene sequence:

>969_bases
ATGGCTGAGAATTTCCCTAAGGTATTCTTCCCATCCACGCCTTCCGGCCCCGAAGGCTTACCAGAGCCGCATGCGATGAG
CTATCGCCATTCCATGACCTGCTATACCGAGGGCATCCGGCCCACGATGCCCGTCCGGTGGCGCGGACTCGACGGGCTGG
TCAGCGTCTATTGGGAGGCCGAGGGCCAGACCGGCGCCCAGGGCTATTACCTGTCGCCCGACCCGCGCATCGTCTTCTTC
TTCAACGACGTGTCCTCGCATATCCGCATCTCGAACCGCGACGACGGCATCGGTCGCCATTGCCGGCCGATGACACGGGC
GATCTATGTGCCGGCCGGCGTGCCGATGTGGACCCGCTTCACCGCGCCGCATGTCTTTTCGCATCTGGACCTGCATGTGC
ACCAGGACCGGCTGCTGCGCTTTCTGTCGCCGCCGCTTGGCCGCTCCGAGGCGCTGAGCGTCCTGCGCCGCCCCGTCGAG
ATCCAGGACGCCGTCGCCGTCGATGCGCTGGCGCGGCTGCTGGTGGACGAGGTGGCGGTGCCGCGCAAGCATGGCATCTA
TGCCGAAAGCCTGGTCGGCAGCATCTTCAGCGCCCTGCTGGACGTGCCGCAGCAGACCGGCGAACGTCCCGCGGCGCTGC
TGACGCCTGCGCAGATGAAGCGCCTGCAAGCGCGGCTGGCGACCCGCCCCGACCGGCGGCTGACCGTGGCCGAGATGGCA
GAGAGCGTCGGCCTGTCGGAAAGCTGGTTCGCGCATGTCTTCAAGAACACGACCGGCACGACGCCGCTGCAATGGCAACT
GGGCCAGCGCATCGACCTGGTCCAGCGGCTGCTGCTGGAATCCGACCTGCGGCTGGCCGACATCGCCGCGCAGCTCGGCT
TTTCCGACCAGGCGCATCTGACGCGGGTGTTCCGCAAATCCTGCGGCGAACCGCCGGCGACCTGGCGCCGGGCCCGGCTT
GCCGGCTAG

Upstream 100 bases:

>100_bases
CCGCTTCGTCGCTGCGACGGCCAGCCCGGCCTGATTGGGTGTGCTGCATATTTGCGACAGGCATGCCCAATCCGAACGCG
GCGGGACAGGACGGATTGCG

Downstream 100 bases:

>100_bases
GGATCGGCGCCCCGCCCGCAGGACGGGCAGGGCGGGCGACGGGATTACCAGGTCCGGCGCAACGTGGCGGTGATCTCGCG
GCCGGGATTGTAGGTGATGG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein; AraC Family Two Component Transcriptional Regulator; Transcriptional Regulator AraC; AraC Family Regulatory Protein; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; Proline Utilization Regulator; ATPase Domain-Containing Protein; Transcriptional Regulator IclR Family; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MAENFPKVFFPSTPSGPEGLPEPHAMSYRHSMTCYTEGIRPTMPVRWRGLDGLVSVYWEAEGQTGAQGYYLSPDPRIVFF
FNDVSSHIRISNRDDGIGRHCRPMTRAIYVPAGVPMWTRFTAPHVFSHLDLHVHQDRLLRFLSPPLGRSEALSVLRRPVE
IQDAVAVDALARLLVDEVAVPRKHGIYAESLVGSIFSALLDVPQQTGERPAALLTPAQMKRLQARLATRPDRRLTVAEMA
ESVGLSESWFAHVFKNTTGTTPLQWQLGQRIDLVQRLLLESDLRLADIAAQLGFSDQAHLTRVFRKSCGEPPATWRRARL
AG

Sequences:

>Translated_322_residues
MAENFPKVFFPSTPSGPEGLPEPHAMSYRHSMTCYTEGIRPTMPVRWRGLDGLVSVYWEAEGQTGAQGYYLSPDPRIVFF
FNDVSSHIRISNRDDGIGRHCRPMTRAIYVPAGVPMWTRFTAPHVFSHLDLHVHQDRLLRFLSPPLGRSEALSVLRRPVE
IQDAVAVDALARLLVDEVAVPRKHGIYAESLVGSIFSALLDVPQQTGERPAALLTPAQMKRLQARLATRPDRRLTVAEMA
ESVGLSESWFAHVFKNTTGTTPLQWQLGQRIDLVQRLLLESDLRLADIAAQLGFSDQAHLTRVFRKSCGEPPATWRRARL
AG
>Mature_321_residues
AENFPKVFFPSTPSGPEGLPEPHAMSYRHSMTCYTEGIRPTMPVRWRGLDGLVSVYWEAEGQTGAQGYYLSPDPRIVFFF
NDVSSHIRISNRDDGIGRHCRPMTRAIYVPAGVPMWTRFTAPHVFSHLDLHVHQDRLLRFLSPPLGRSEALSVLRRPVEI
QDAVAVDALARLLVDEVAVPRKHGIYAESLVGSIFSALLDVPQQTGERPAALLTPAQMKRLQARLATRPDRRLTVAEMAE
SVGLSESWFAHVFKNTTGTTPLQWQLGQRIDLVQRLLLESDLRLADIAAQLGFSDQAHLTRVFRKSCGEPPATWRRARLA
G

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36081; Mature: 35950

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENFPKVFFPSTPSGPEGLPEPHAMSYRHSMTCYTEGIRPTMPVRWRGLDGLVSVYWEA
CCCCCCCEECCCCCCCCCCCCCCCHHHHHHCHHHEECCCCCCCCEEECCCCCEEEEEEEC
EGQTGAQGYYLSPDPRIVFFFNDVSSHIRISNRDDGIGRHCRPMTRAIYVPAGVPMWTRF
CCCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCCCCCCCCHHHHEEECCCCCCHHHHC
TAPHVFSHLDLHVHQDRLLRFLSPPLGRSEALSVLRRPVEIQDAVAVDALARLLVDEVAV
CHHHHHHHHHHEECHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
PRKHGIYAESLVGSIFSALLDVPQQTGERPAALLTPAQMKRLQARLATRPDRRLTVAEMA
CCCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHH
ESVGLSESWFAHVFKNTTGTTPLQWQLGQRIDLVQRLLLESDLRLADIAAQLGFSDQAHL
HHCCCCHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
TRVFRKSCGEPPATWRRARLAG
HHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
AENFPKVFFPSTPSGPEGLPEPHAMSYRHSMTCYTEGIRPTMPVRWRGLDGLVSVYWEA
CCCCCCEECCCCCCCCCCCCCCCHHHHHHCHHHEECCCCCCCCEEECCCCCEEEEEEEC
EGQTGAQGYYLSPDPRIVFFFNDVSSHIRISNRDDGIGRHCRPMTRAIYVPAGVPMWTRF
CCCCCCCCEEECCCCEEEEEEECCCCCEEECCCCCCCCCCCCHHHHEEECCCCCCHHHHC
TAPHVFSHLDLHVHQDRLLRFLSPPLGRSEALSVLRRPVEIQDAVAVDALARLLVDEVAV
CHHHHHHHHHHEECHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
PRKHGIYAESLVGSIFSALLDVPQQTGERPAALLTPAQMKRLQARLATRPDRRLTVAEMA
CCCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHHH
ESVGLSESWFAHVFKNTTGTTPLQWQLGQRIDLVQRLLLESDLRLADIAAQLGFSDQAHL
HHCCCCHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHH
TRVFRKSCGEPPATWRRARLAG
HHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA