Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
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Accession | NC_008687 |
Length | 1,730,097 |
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The map label for this gene is fepB [C]
Identifier: 119386233
GI number: 119386233
Start: 671140
End: 672141
Strand: Direct
Name: fepB [C]
Synonym: Pden_3522
Alternate gene names: 119386233
Gene position: 671140-672141 (Clockwise)
Preceding gene: 119386231
Following gene: 119386234
Centisome position: 38.79
GC content: 69.26
Gene sequence:
>1002_bases ATGCCGTCGAAAACCCGCATCTGCCTGACGCTGGCCGTCGCCCTCCTGTCGCTGGCTGGCCTGCGCACGGCCTGGGCCCA GGGGGCCGAGGAGCGCTTTCCGGTCGCTGTCGAACATGCCTTCGGCACCACCACCATTCCTGCCCGGCCCCAGCGGGTCG CCACCGTCGCCTGGGCCAACCACGAGGTTCCGCTGGCGCTCGGCATCGTGCCGGTCGGGTTTGCCGCCGCCAATTTCGGC GATGACGACGGCGACGGCGTCCTGCCCTGGGTCGAGGAGCGGCTGGAGGAGCTGGGCGCCGAAACCCCGGTCCTGTTCGA CGAGGGCGACGGCATCGATTTCGAGGCGGTCGCCGCCACCCGCCCGGACGTGATCCTGGCCGCCTATTCCGGGCTCAGCC GGGCCGATTACGACATGCTCAGCCAGATCGCCCCGGTGATCGCCTATCCCAAGACGCCTTGGGCGACGAACTGGCGCGAC ATGATCCGGTTGAACAGCGCCGGCCTGGGCATGGAGGCCGAGGGCGACGCGCTGATCGCGCGCATCGAGGGCCGGATCGC CGAGGCCGTTGCCGCCCATCCCCAGCTTGCCGGCAAGTCGGCCATGTTCGTGACCCATCTGGACACCACGAACCTGAGCC TCGTCAGCTTCTACACCACCCATGACACGCGCGTGCAGTTCTTTGCCGATTTGGGGCTGCGCTCGCCGCAAAGCGTGGTC GCGGCCTCGGCGGACGGCAGCTTTTCCGGGCAGGTCAGCGCCGAGCGGATCGACGCCTTCGACGACGTGGACATCCTCGT GACCTATGGCAGCCGCGACCTGTTCGAGGCGATGCGGCACGATCCGCTGATCTCGCACATGCCGGCGGTCAGGAACGATG CGCTGGTGATGCTGGGCAGCGATCCGATGGGCACGGCGGCCAACCCGACGCCGCTGTCGATCCCCTGGGTGCTCGACGAT TACGTCGCGCGGCTGGCCAGGGCCGCCGGCCCGGCCAGATGA
Upstream 100 bases:
>100_bases AAAATGTCGCCGGTTTTGGTCAGGAACCGATCTTGTGCTTGACGCATCCGGCCCGAGATGAAACCTCGGCCGCGTTCTTT CTGCGATTGCGAGGCTTGCC
Downstream 100 bases:
>100_bases CGGCGCGGGCCGGCGCCATGCCGGGCCGTCGGGCGGCGCGGAACACGTTGGCGCTGGCGGCGGTCGTGCTGCTGGTGGCA CTGCTTTGCGCGCTGTCGGT
Product: periplasmic binding protein
Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]
Alternate protein names: Twin-Arginine Translocation Pathway Signal; Transport System Permease Protein; ABC-Type Fe3+-Siderophores Transport System; ABC-Transport System; ABC-Type Fe3+-Hydroxamate Transport System; Periplasmic Iron-Transport Lipoprotein; Periplasmic IRON-Transport Lipoprotein; Iron ABC Transporter Permease; Lipoprotein
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MPSKTRICLTLAVALLSLAGLRTAWAQGAEERFPVAVEHAFGTTTIPARPQRVATVAWANHEVPLALGIVPVGFAAANFG DDDGDGVLPWVEERLEELGAETPVLFDEGDGIDFEAVAATRPDVILAAYSGLSRADYDMLSQIAPVIAYPKTPWATNWRD MIRLNSAGLGMEAEGDALIARIEGRIAEAVAAHPQLAGKSAMFVTHLDTTNLSLVSFYTTHDTRVQFFADLGLRSPQSVV AASADGSFSGQVSAERIDAFDDVDILVTYGSRDLFEAMRHDPLISHMPAVRNDALVMLGSDPMGTAANPTPLSIPWVLDD YVARLARAAGPAR
Sequences:
>Translated_333_residues MPSKTRICLTLAVALLSLAGLRTAWAQGAEERFPVAVEHAFGTTTIPARPQRVATVAWANHEVPLALGIVPVGFAAANFG DDDGDGVLPWVEERLEELGAETPVLFDEGDGIDFEAVAATRPDVILAAYSGLSRADYDMLSQIAPVIAYPKTPWATNWRD MIRLNSAGLGMEAEGDALIARIEGRIAEAVAAHPQLAGKSAMFVTHLDTTNLSLVSFYTTHDTRVQFFADLGLRSPQSVV AASADGSFSGQVSAERIDAFDDVDILVTYGSRDLFEAMRHDPLISHMPAVRNDALVMLGSDPMGTAANPTPLSIPWVLDD YVARLARAAGPAR >Mature_332_residues PSKTRICLTLAVALLSLAGLRTAWAQGAEERFPVAVEHAFGTTTIPARPQRVATVAWANHEVPLALGIVPVGFAAANFGD DDGDGVLPWVEERLEELGAETPVLFDEGDGIDFEAVAATRPDVILAAYSGLSRADYDMLSQIAPVIAYPKTPWATNWRDM IRLNSAGLGMEAEGDALIARIEGRIAEAVAAHPQLAGKSAMFVTHLDTTNLSLVSFYTTHDTRVQFFADLGLRSPQSVVA ASADGSFSGQVSAERIDAFDDVDILVTYGSRDLFEAMRHDPLISHMPAVRNDALVMLGSDPMGTAANPTPLSIPWVLDDY VARLARAAGPAR
Specific function: Binds Ferrienterobactin; Part Of The Binding-Protein- Dependent Transport System For Uptake Of Ferrienterobactin. [C]
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35596; Mature: 35464
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSKTRICLTLAVALLSLAGLRTAWAQGAEERFPVAVEHAFGTTTIPARPQRVATVAWAN CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECC HEVPLALGIVPVGFAAANFGDDDGDGVLPWVEERLEELGAETPVLFDEGDGIDFEAVAAT CCCCEEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEECC RPDVILAAYSGLSRADYDMLSQIAPVIAYPKTPWATNWRDMIRLNSAGLGMEAEGDALIA CCCEEEEECCCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHEEECCCCCCCCCCCCEEEE RIEGRIAEAVAAHPQLAGKSAMFVTHLDTTNLSLVSFYTTHDTRVQFFADLGLRSPQSVV EHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCHHHE AASADGSFSGQVSAERIDAFDDVDILVTYGSRDLFEAMRHDPLISHMPAVRNDALVMLGS EECCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHCCCHHHHCCCCCCCCEEEECC DPMGTAANPTPLSIPWVLDDYVARLARAAGPAR CCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PSKTRICLTLAVALLSLAGLRTAWAQGAEERFPVAVEHAFGTTTIPARPQRVATVAWAN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECC HEVPLALGIVPVGFAAANFGDDDGDGVLPWVEERLEELGAETPVLFDEGDGIDFEAVAAT CCCCEEEEEEECCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEECC RPDVILAAYSGLSRADYDMLSQIAPVIAYPKTPWATNWRDMIRLNSAGLGMEAEGDALIA CCCEEEEECCCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHEEECCCCCCCCCCCCEEEE RIEGRIAEAVAAHPQLAGKSAMFVTHLDTTNLSLVSFYTTHDTRVQFFADLGLRSPQSVV EHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCHHHE AASADGSFSGQVSAERIDAFDDVDILVTYGSRDLFEAMRHDPLISHMPAVRNDALVMLGS EECCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHCCCHHHHCCCCCCCCEEEECC DPMGTAANPTPLSIPWVLDDYVARLARAAGPAR CCCCCCCCCCCEECCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]
Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA