| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is pcpB [H]
Identifier: 119386199
GI number: 119386199
Start: 634065
End: 635972
Strand: Direct
Name: pcpB [H]
Synonym: Pden_3488
Alternate gene names: 119386199
Gene position: 634065-635972 (Clockwise)
Preceding gene: 119386197
Following gene: 119386201
Centisome position: 36.65
GC content: 67.92
Gene sequence:
>1908_bases ATGCAGTTTCACCTTGACGGCTTTCGGCCCGGCGACCCGACCCATCATCCGGCCGCCACCGCGCAGGACGATCCGGCCGG GAACGGTGCGGACGTGGATGTGCTGATCGTCGGCAGCGGTCCGGCCGGGCTGACGCTGGCGGCGCAATTGGCGATGTTCC CCTCGATCCGCACCCGCATCGTCGAGCGGAAGCCGGGACCGCTGGAACTGGGCCAGGCCGACGGGATCGCCTGCCGCACG ATGGAGATGTTCAACGCCTTCGGCTTTGCCGACCGGGTGATGAAGGAAGCCTATTGGGTGAACGAGGTCACCTTCTGGAA GCCGCAGGACGGCGATGGCCCGATCATGCGCCACGGCCGTATCCGCGACACCGAGGAGGGGCTTTCGGAATTTCCCCATG TCATCCTGAACCAGGCGCGGGTGCATGACTTCTATCTTGAAGCGATGCGTCACGCTCGGGCCCCGCTGCAACCGGATTAC GGCCTGCAACTGGCCGATCTGACCATTCCCGACGATCCCGCGCAGCCGGTCGAGGCACGGCTGCGCCCTGTGGGGGCCGA GGACGATTCCCGCGACCAGATCGTCCGCGCCCGCTATGTCGTCGGCTGCGACGGTGCCCGCAGCCAGGTCCGCCGCCGGA TCGGGCGGGACTTGCGCGGCGAGGCGGCGAACCAGGCCTGGGGCGTGATGGACGTTCTGGCCTATACCGACTTTCCCGAC ATCCGGCTGAAATCCGCGATCCATTCCGCGCATGAAGGCAATATCCTGATCATCCCGCGCGAAGGCGGCTATCTGGTCAG GCTTTACATCGAGCTGGACAAGCTGGCCGAGGATGAGCGCGTCGCCTCGAAGAACATCACCCGGGAAACCCTGATCGCCG CCGCGCAGCGGATCCTGCATCCCTATGTGCTGGAGGTGAAAGAGGTCGCCTGGTGGTCCGTCTATGAAATCGGCCAGCGG CTGACCGACCGTTTCGACGACCTGCCTGCCGATGCCCCCGCCTCGCGCATGCCGCGGGTGTTCATCGCCGGCGACGCCTG CCACACCCACAGTCCCAAGGCGGGGCAGGGCATGAACGTCTCGATGCAGGACAGCTTCAACCTTGGCTGGAAACTGGCGG CGGTGCTGAGCGGACAGGCCGATGCCGGGCTGCTGCGCAGCTATTCGGCCGAGCGGCAGGAGGTCGCGCGGGAACTGATC GACTTCGACCGCGAATTCGCGCGGATGTTCAGCGCCCGCCCCAAGACCGCCGAGGATGACGGCGAGGGCGTCGATCCGGC CGAGTTCCAGCGCTATTTCGTCCAGCATGGCCGTTTCACCGCCGGCACGGCGACGCGTTATCGCCGTTCGGAACTGACCG GCGCGGATACGCATCGGCATCTGGCCACCGGCTTTCCGGTCGGGATGCGCTTCCATTCGGCGCCGGTGGTGCGGCTGGCC GATGCGCGGCCCATGCAACTGGGCCATGTCGCCCAGGCGGACGGGCGCTGGCGGATCTATCTGTTCGCCGACGCGCAGGG GGTGGCGCCCGGCTCGGGGCTGGCGCGGCTTTGCGAGCGGCTGGACCGGGAGGGCTCGGTCCTGCGGCGCCATACCCCCG CGGGCGCGAATCCCGATGCGGTGTTCGACATCCGCGCGGTGTTGCAGCAGCCCCACCAGTCGCTGTCGATGGACGACCTG CCGGGGCTGCTGTGGCCGCGCAAGGGTCGCCACGGGCTGCGCGACTATGAAAAGGCGTTCTGCGCCGATCCGGCCGCGGG CGACATCTTCGATCTGCGCGGCATCGACCGCGAGCGGGGCTGCATGGTGGTGGTGCGCCCCGACCAATATGTCGCCCAGG TCCTGCCGCTGGAGGATGACGCGACGCTGGGCGAATATTTCGCGGGCGTGCTGCGGCTGGCGGGCTAG
Upstream 100 bases:
>100_bases GCATACTTATCATATTGACTAGTGTGCTTATGATAAGTATGCATCCTATTATGCCCCGATATCCTGTCCGATGATCGGGC GAACCCAGAGGGAGGAAGGA
Downstream 100 bases:
>100_bases GTCGCGGTGCGGCGGCCGGCCTTGCCTGCGTCCTGGCCGCGGGTCGGGCCGGCATCTGCCGGTCCCGGCCCTGGTCGCGG CCCGAAGCCGTCGGCGATCA
Product: phenol 2-monooxygenase
Products: NA
Alternate protein names: Pentachlorophenol hydroxylase [H]
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MQFHLDGFRPGDPTHHPAATAQDDPAGNGADVDVLIVGSGPAGLTLAAQLAMFPSIRTRIVERKPGPLELGQADGIACRT MEMFNAFGFADRVMKEAYWVNEVTFWKPQDGDGPIMRHGRIRDTEEGLSEFPHVILNQARVHDFYLEAMRHARAPLQPDY GLQLADLTIPDDPAQPVEARLRPVGAEDDSRDQIVRARYVVGCDGARSQVRRRIGRDLRGEAANQAWGVMDVLAYTDFPD IRLKSAIHSAHEGNILIIPREGGYLVRLYIELDKLAEDERVASKNITRETLIAAAQRILHPYVLEVKEVAWWSVYEIGQR LTDRFDDLPADAPASRMPRVFIAGDACHTHSPKAGQGMNVSMQDSFNLGWKLAAVLSGQADAGLLRSYSAERQEVARELI DFDREFARMFSARPKTAEDDGEGVDPAEFQRYFVQHGRFTAGTATRYRRSELTGADTHRHLATGFPVGMRFHSAPVVRLA DARPMQLGHVAQADGRWRIYLFADAQGVAPGSGLARLCERLDREGSVLRRHTPAGANPDAVFDIRAVLQQPHQSLSMDDL PGLLWPRKGRHGLRDYEKAFCADPAAGDIFDLRGIDRERGCMVVVRPDQYVAQVLPLEDDATLGEYFAGVLRLAG
Sequences:
>Translated_635_residues MQFHLDGFRPGDPTHHPAATAQDDPAGNGADVDVLIVGSGPAGLTLAAQLAMFPSIRTRIVERKPGPLELGQADGIACRT MEMFNAFGFADRVMKEAYWVNEVTFWKPQDGDGPIMRHGRIRDTEEGLSEFPHVILNQARVHDFYLEAMRHARAPLQPDY GLQLADLTIPDDPAQPVEARLRPVGAEDDSRDQIVRARYVVGCDGARSQVRRRIGRDLRGEAANQAWGVMDVLAYTDFPD IRLKSAIHSAHEGNILIIPREGGYLVRLYIELDKLAEDERVASKNITRETLIAAAQRILHPYVLEVKEVAWWSVYEIGQR LTDRFDDLPADAPASRMPRVFIAGDACHTHSPKAGQGMNVSMQDSFNLGWKLAAVLSGQADAGLLRSYSAERQEVARELI DFDREFARMFSARPKTAEDDGEGVDPAEFQRYFVQHGRFTAGTATRYRRSELTGADTHRHLATGFPVGMRFHSAPVVRLA DARPMQLGHVAQADGRWRIYLFADAQGVAPGSGLARLCERLDREGSVLRRHTPAGANPDAVFDIRAVLQQPHQSLSMDDL PGLLWPRKGRHGLRDYEKAFCADPAAGDIFDLRGIDRERGCMVVVRPDQYVAQVLPLEDDATLGEYFAGVLRLAG >Mature_635_residues MQFHLDGFRPGDPTHHPAATAQDDPAGNGADVDVLIVGSGPAGLTLAAQLAMFPSIRTRIVERKPGPLELGQADGIACRT MEMFNAFGFADRVMKEAYWVNEVTFWKPQDGDGPIMRHGRIRDTEEGLSEFPHVILNQARVHDFYLEAMRHARAPLQPDY GLQLADLTIPDDPAQPVEARLRPVGAEDDSRDQIVRARYVVGCDGARSQVRRRIGRDLRGEAANQAWGVMDVLAYTDFPD IRLKSAIHSAHEGNILIIPREGGYLVRLYIELDKLAEDERVASKNITRETLIAAAQRILHPYVLEVKEVAWWSVYEIGQR LTDRFDDLPADAPASRMPRVFIAGDACHTHSPKAGQGMNVSMQDSFNLGWKLAAVLSGQADAGLLRSYSAERQEVARELI DFDREFARMFSARPKTAEDDGEGVDPAEFQRYFVQHGRFTAGTATRYRRSELTGADTHRHLATGFPVGMRFHSAPVVRLA DARPMQLGHVAQADGRWRIYLFADAQGVAPGSGLARLCERLDREGSVLRRHTPAGANPDAVFDIRAVLQQPHQSLSMDDL PGLLWPRKGRHGLRDYEKAFCADPAAGDIFDLRGIDRERGCMVVVRPDQYVAQVLPLEDDATLGEYFAGVLRLAG
Specific function: Dechlorination of pentachlorophenol to tetrachlorohydroquinone. Removes also hydrogen and nitro, amino, and cyano groups from benzene ring at the para position in relation to the hydroxyl of phenol [H]
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pheA/tfdB FAD monooxygenase family [H]
Homologues:
Organism=Escherichia coli, GI1786543, Length=394, Percent_Identity=27.4111675126904, Blast_Score=94, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: =1.14.13.50 [H]
Molecular weight: Translated: 70475; Mature: 70475
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFHLDGFRPGDPTHHPAATAQDDPAGNGADVDVLIVGSGPAGLTLAAQLAMFPSIRTRI CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH VERKPGPLELGQADGIACRTMEMFNAFGFADRVMKEAYWVNEVTFWKPQDGDGPIMRHGR HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEECCC IRDTEEGLSEFPHVILNQARVHDFYLEAMRHARAPLQPDYGLQLADLTIPDDPAQPVEAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHH LRPVGAEDDSRDQIVRARYVVGCDGARSQVRRRIGRDLRGEAANQAWGVMDVLAYTDFPD HCCCCCCCCCHHHHHHHHEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC IRLKSAIHSAHEGNILIIPREGGYLVRLYIELDKLAEDERVASKNITRETLIAAAQRILH HHHHHHHHHCCCCCEEEEECCCCEEEEEEEEHHHHCCHHHHHHHCCHHHHHHHHHHHHHH PYVLEVKEVAWWSVYEIGQRLTDRFDDLPADAPASRMPRVFIAGDACHTHSPKAGQGMNV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCE SMQDSFNLGWKLAAVLSGQADAGLLRSYSAERQEVARELIDFDREFARMFSARPKTAEDD EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GEGVDPAEFQRYFVQHGRFTAGTATRYRRSELTGADTHRHLATGFPVGMRFHSAPVVRLA CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCEEEEC DARPMQLGHVAQADGRWRIYLFADAQGVAPGSGLARLCERLDREGSVLRRHTPAGANPDA CCCCCCCCCEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCH VFDIRAVLQQPHQSLSMDDLPGLLWPRKGRHGLRDYEKAFCADPAAGDIFDLRGIDRERG HHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCC CMVVVRPDQYVAQVLPLEDDATLGEYFAGVLRLAG EEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MQFHLDGFRPGDPTHHPAATAQDDPAGNGADVDVLIVGSGPAGLTLAAQLAMFPSIRTRI CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH VERKPGPLELGQADGIACRTMEMFNAFGFADRVMKEAYWVNEVTFWKPQDGDGPIMRHGR HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCEECCC IRDTEEGLSEFPHVILNQARVHDFYLEAMRHARAPLQPDYGLQLADLTIPDDPAQPVEAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHH LRPVGAEDDSRDQIVRARYVVGCDGARSQVRRRIGRDLRGEAANQAWGVMDVLAYTDFPD HCCCCCCCCCHHHHHHHHEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC IRLKSAIHSAHEGNILIIPREGGYLVRLYIELDKLAEDERVASKNITRETLIAAAQRILH HHHHHHHHHCCCCCEEEEECCCCEEEEEEEEHHHHCCHHHHHHHCCHHHHHHHHHHHHHH PYVLEVKEVAWWSVYEIGQRLTDRFDDLPADAPASRMPRVFIAGDACHTHSPKAGQGMNV HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCCCCCCCCCCCCE SMQDSFNLGWKLAAVLSGQADAGLLRSYSAERQEVARELIDFDREFARMFSARPKTAEDD EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GEGVDPAEFQRYFVQHGRFTAGTATRYRRSELTGADTHRHLATGFPVGMRFHSAPVVRLA CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCEEEEC DARPMQLGHVAQADGRWRIYLFADAQGVAPGSGLARLCERLDREGSVLRRHTPAGANPDA CCCCCCCCCEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCH VFDIRAVLQQPHQSLSMDDLPGLLWPRKGRHGLRDYEKAFCADPAAGDIFDLRGIDRERG HHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCC CMVVVRPDQYVAQVLPLEDDATLGEYFAGVLRLAG EEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7678243; 12169590 [H]