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The map label for this gene is 119357222

Identifier: 119357222

GI number: 119357222

Start: 1609139

End: 1609561

Strand: Direct

Name: 119357222

Synonym: Cpha266_1413

Alternate gene names: NA

Gene position: 1609139-1609561 (Clockwise)

Preceding gene: 119357218

Following gene: 119357223

Centisome position: 51.35

GC content: 46.34

Gene sequence:

>423_bases
ATGATGCGCATAACAAAAACACCCATTGACCTTCTTGATAATATATACAGTCTTGCCTTCTGGATGACCGGAAGTGAAAC
TGAATCGAGGGATCTCGTCAGCACGACCTATCTTAACGCAGGGATAGATACCCCCGAAGATGAACTTCTTAAAACATTCA
GAAACTGTTACGTTGATCGATATGGTCAGAAAACGGAGTTCTGCATAAGCAGTAAATCCTGTCTGCCGCTCTCTTCACTT
GCAGCATCCCTGCGTATGTGGGCAGCAGATATCAAACTTTCTGTGTTGCTGAGTGAAATATCAGGGCTGCGGCACCGTGA
AATCTCCGATATTATCGGAAAGCCCATAGAAACGGTTCGGCTCTGGCTTTACTGGGGGCGCAAATTCCTGGTTAACGACG
ATCTTCTTAAGGCATCCGCCTGA

Upstream 100 bases:

>100_bases
AAACATCTTTTTTCATTTTTCATGATAAAAAAACTGGACATCGTCATTTTTTTTTATACATTTAAATGAGGACAAAATTA
ATCCTATTTATGGAGGAAAT

Downstream 100 bases:

>100_bases
GAAGGCTGCGTAATTGGCACAAAAGGCCGTCTTATCGATATAAGACGGCCTTTTGTATTTATCCGCATGGCTTTATATTG
CCTGAACACCGAAGAGTCTC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MMRITKTPIDLLDNIYSLAFWMTGSETESRDLVSTTYLNAGIDTPEDELLKTFRNCYVDRYGQKTEFCISSKSCLPLSSL
AASLRMWAADIKLSVLLSEISGLRHREISDIIGKPIETVRLWLYWGRKFLVNDDLLKASA

Sequences:

>Translated_140_residues
MMRITKTPIDLLDNIYSLAFWMTGSETESRDLVSTTYLNAGIDTPEDELLKTFRNCYVDRYGQKTEFCISSKSCLPLSSL
AASLRMWAADIKLSVLLSEISGLRHREISDIIGKPIETVRLWLYWGRKFLVNDDLLKASA
>Mature_140_residues
MMRITKTPIDLLDNIYSLAFWMTGSETESRDLVSTTYLNAGIDTPEDELLKTFRNCYVDRYGQKTEFCISSKSCLPLSSL
AASLRMWAADIKLSVLLSEISGLRHREISDIIGKPIETVRLWLYWGRKFLVNDDLLKASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15959; Mature: 15959

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRITKTPIDLLDNIYSLAFWMTGSETESRDLVSTTYLNAGIDTPEDELLKTFRNCYVDR
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YGQKTEFCISSKSCLPLSSLAASLRMWAADIKLSVLLSEISGLRHREISDIIGKPIETVR
CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
LWLYWGRKFLVNDDLLKASA
HHHHHCCHHEECCCHHCCCC
>Mature Secondary Structure
MMRITKTPIDLLDNIYSLAFWMTGSETESRDLVSTTYLNAGIDTPEDELLKTFRNCYVDR
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YGQKTEFCISSKSCLPLSSLAASLRMWAADIKLSVLLSEISGLRHREISDIIGKPIETVR
CCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHH
LWLYWGRKFLVNDDLLKASA
HHHHHCCHHEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA