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The map label for this gene is ydiS [C]

Identifier: 119356887

GI number: 119356887

Start: 1207102

End: 1208250

Strand: Direct

Name: ydiS [C]

Synonym: Cpha266_1066

Alternate gene names: 119356887

Gene position: 1207102-1208250 (Clockwise)

Preceding gene: 119356884

Following gene: 119356889

Centisome position: 38.52

GC content: 41.95

Gene sequence:

>1149_bases
ATGAAAAATTCATATACATGCCTGGTTGTTGGTGCGGGGCCATCCGGATCGTCGGCTGCATATACTTTTGCAAAAAATGG
CATAGATGTCTGCGTTGTAGACAAGGCTTTTTTTCCAAGAGATAAACTCTGTGGAGGGTTGTTGAGCAAAAGGACCAAAA
AGAGTGTTCTGGATGTGTTTGATCTCAATTGGGATGATGTTTATGAGTACACGTCAAACGGAGCTCTTTTTTTTTATAAG
GGTCAACAGATAAACATGATTGAAAATTATGGGGAGTTATATTTTTGTAATCGCAGTACGTTTGACAATACTTTACTGGG
TCTGGTGAAGTCAAAGGGGGCGGATGTTGTGTCAGGGGATAAAGTTGAGTTTATAGATGCAGCCTCTAAAACCTGTCTGC
TGAGTTCAGGACAGCAGATAAATTATCGTTATCTGATCGCTGCGGACGGGGTAAATAGTCTCATAGCCCGGAATGTCACA
TCCAAAAAATTTGATAAAAGCAAGTATGCTTTTGCCGTGCAGGTCGAAATACAGAGGGCAGGTTACAGCCAAAACGACAT
AGCAAAGCCGGAGATTTATTTTGGCGAAGTTGACTGGGGTTATGGATGGGTATTTCCTAAAAAAAACAGCTATTCGGTTG
GTGTTGGCGGGCTATACTCAAAAAACAGTGATGTTGGAAAAAAATTCAAAGAGTTCTGTTTGGCCCGAAATCGTCAGCCG
TATTCAGAGCCGTTGAAAGGGCATTATATTCCGTTTGGCAACTATGCCCGGCATGTTGTAGCCAAAGATATTATTCTCGT
AGGAGATGCAGCGGGATTAGTTGATCCGGTAACAGGGGAGGGGATTGCACATGCTGTTGAGAGCGGCCACTATGCGGCGC
AGGCGGTCATTTCAGCACTTTCAGGCAATAATATCAGCCTTGTTGATGAGTATGAAAAATATTACTCGAAAATAACTCGC
GAAATGGCTCGCGCAAGGATGCTGCAATATTTTTTGTTCTCCGGATACACGCAATCTTTGGTTATGAAGGCTCTTTCGAG
ATCAAAAACAATGCCATATCATTATATGGATTTGTTATCGGGCGATATCGATTACAGGGATCTTTTTTTGATCATACGAA
AAAAACTGAAAAAAATTGTTTTCGGGTGA

Upstream 100 bases:

>100_bases
GTCATTGATACCGGAGATGATTGTGCGTATGAGATGAGGCAAGTGGTTCTTGTTTCGCAGGTAAAAAAAAACATGTTCGG
ATTATACCTGAATTGCTGTC

Downstream 100 bases:

>100_bases
TAATGATCGGGCAAATAGGGATACTCCTCCTCATTACGGCAACAATCATCTTTTTGAGATCATCTGCATGAGCGGTAAAG
CGACGTTATTCAGCACTTGT

Product: geranylgeranyl reductase

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKNSYTCLVVGAGPSGSSAAYTFAKNGIDVCVVDKAFFPRDKLCGGLLSKRTKKSVLDVFDLNWDDVYEYTSNGALFFYK
GQQINMIENYGELYFCNRSTFDNTLLGLVKSKGADVVSGDKVEFIDAASKTCLLSSGQQINYRYLIAADGVNSLIARNVT
SKKFDKSKYAFAVQVEIQRAGYSQNDIAKPEIYFGEVDWGYGWVFPKKNSYSVGVGGLYSKNSDVGKKFKEFCLARNRQP
YSEPLKGHYIPFGNYARHVVAKDIILVGDAAGLVDPVTGEGIAHAVESGHYAAQAVISALSGNNISLVDEYEKYYSKITR
EMARARMLQYFLFSGYTQSLVMKALSRSKTMPYHYMDLLSGDIDYRDLFLIIRKKLKKIVFG

Sequences:

>Translated_382_residues
MKNSYTCLVVGAGPSGSSAAYTFAKNGIDVCVVDKAFFPRDKLCGGLLSKRTKKSVLDVFDLNWDDVYEYTSNGALFFYK
GQQINMIENYGELYFCNRSTFDNTLLGLVKSKGADVVSGDKVEFIDAASKTCLLSSGQQINYRYLIAADGVNSLIARNVT
SKKFDKSKYAFAVQVEIQRAGYSQNDIAKPEIYFGEVDWGYGWVFPKKNSYSVGVGGLYSKNSDVGKKFKEFCLARNRQP
YSEPLKGHYIPFGNYARHVVAKDIILVGDAAGLVDPVTGEGIAHAVESGHYAAQAVISALSGNNISLVDEYEKYYSKITR
EMARARMLQYFLFSGYTQSLVMKALSRSKTMPYHYMDLLSGDIDYRDLFLIIRKKLKKIVFG
>Mature_382_residues
MKNSYTCLVVGAGPSGSSAAYTFAKNGIDVCVVDKAFFPRDKLCGGLLSKRTKKSVLDVFDLNWDDVYEYTSNGALFFYK
GQQINMIENYGELYFCNRSTFDNTLLGLVKSKGADVVSGDKVEFIDAASKTCLLSSGQQINYRYLIAADGVNSLIARNVT
SKKFDKSKYAFAVQVEIQRAGYSQNDIAKPEIYFGEVDWGYGWVFPKKNSYSVGVGGLYSKNSDVGKKFKEFCLARNRQP
YSEPLKGHYIPFGNYARHVVAKDIILVGDAAGLVDPVTGEGIAHAVESGHYAAQAVISALSGNNISLVDEYEKYYSKITR
EMARARMLQYFLFSGYTQSLVMKALSRSKTMPYHYMDLLSGDIDYRDLFLIIRKKLKKIVFG

Specific function: Probably Accepts Electrons From Ydiq/Ydir And Reduces A Quinone. [C]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. ChlP subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787991, Length=307, Percent_Identity=24.1042345276873, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 42601; Mature: 42601

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSYTCLVVGAGPSGSSAAYTFAKNGIDVCVVDKAFFPRDKLCGGLLSKRTKKSVLDVF
CCCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DLNWDDVYEYTSNGALFFYKGQQINMIENYGELYFCNRSTFDNTLLGLVKSKGADVVSGD
CCCHHHHHHCCCCCEEEEEECCEEEEEECCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC
KVEFIDAASKTCLLSSGQQINYRYLIAADGVNSLIARNVTSKKFDKSKYAFAVQVEIQRA
CEEEECCCCCEEEECCCCEEEEEEEEEECCHHHHHHCCCHHHHCCCCCEEEEEEEEEEEC
GYSQNDIAKPEIYFGEVDWGYGWVFPKKNSYSVGVGGLYSKNSDVGKKFKEFCLARNRQP
CCCCCCCCCCEEEEEEECCCEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCC
YSEPLKGHYIPFGNYARHVVAKDIILVGDAAGLVDPVTGEGIAHAVESGHYAAQAVISAL
CCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
SGNNISLVDEYEKYYSKITREMARARMLQYFLFSGYTQSLVMKALSRSKTMPYHYMDLLS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHC
GDIDYRDLFLIIRKKLKKIVFG
CCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKNSYTCLVVGAGPSGSSAAYTFAKNGIDVCVVDKAFFPRDKLCGGLLSKRTKKSVLDVF
CCCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
DLNWDDVYEYTSNGALFFYKGQQINMIENYGELYFCNRSTFDNTLLGLVKSKGADVVSGD
CCCHHHHHHCCCCCEEEEEECCEEEEEECCCCEEEECCCCCCHHHHHHHHCCCCCCCCCC
KVEFIDAASKTCLLSSGQQINYRYLIAADGVNSLIARNVTSKKFDKSKYAFAVQVEIQRA
CEEEECCCCCEEEECCCCEEEEEEEEEECCHHHHHHCCCHHHHCCCCCEEEEEEEEEEEC
GYSQNDIAKPEIYFGEVDWGYGWVFPKKNSYSVGVGGLYSKNSDVGKKFKEFCLARNRQP
CCCCCCCCCCEEEEEEECCCEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCC
YSEPLKGHYIPFGNYARHVVAKDIILVGDAAGLVDPVTGEGIAHAVESGHYAAQAVISAL
CCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
SGNNISLVDEYEKYYSKITREMARARMLQYFLFSGYTQSLVMKALSRSKTMPYHYMDLLS
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHC
GDIDYRDLFLIIRKKLKKIVFG
CCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9063468 [H]