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The map label for this gene is ydiS [C]

Identifier: 119356884

GI number: 119356884

Start: 1201355

End: 1202512

Strand: Direct

Name: ydiS [C]

Synonym: Cpha266_1062

Alternate gene names: 119356884

Gene position: 1201355-1202512 (Clockwise)

Preceding gene: 119356883

Following gene: 119356887

Centisome position: 38.33

GC content: 44.47

Gene sequence:

>1158_bases
ATGAAGAACAGCTATACATGCCTTGTTGCAGGTGCAGGGCCGTCGGGGACGGCTGCGGCATATACTCTTGCAAAAAACGG
CATAGATGTCTGTATTGTAGACAAAGCCATCTTTCCAAGAGAGAAGTTATGTGGAGGCGGATTGACCAGAAGGACAAAAA
ACAGTTTTCTGGATGTTTTCGATTTGAACTGGGAGGATATGTATGAATATTCAGCCAATAGCGCGCTGTTTTATTACAAG
GGGCATGTAATTAACAAGATCGAAGATTACGGGGAGTTGTATTTTTGCGATCGTATCATGTTCGATAACAGGCTGCTCGA
TCAGGCAACGTCAAGGGGTGTTGATGTCGTTCCGGGTGAAAGGGTTGACGTTATAGATACAGTTGAAAAAACGTGCAAGC
TTGCTTCAGGACGTCAAATACGGTATCGTTACCTGATCGGAGCCGATGGCGTCAATAGCGTGGTCGCCCGGCAATTTGTA
TCGAGAAGAATCAATAGAAACAGGTATGCGTATGCTCTACAGGTTGATATTCATAAAGATGATTACGGAAAAAAAGAATT
GACCAGGCCGGAATTGTATTTTGGCGATGTTGCTATGGGGTATGGGTGGGTTTTTCCGAAAAGAAACAGTTATACAGTCG
GTATTTGCAGCCGGTATTCGAAAACTGTCGATGCCAGAAAAAAAATGATGGATTTCTTTGCCGACCGAAACGGCGCGCCA
TTTAAAGGCAGGTTGAAAGGGCATTATATTCCTTTCGGAAACTATGCTGAACGCGTTGTTGAGAATGATATGATTCTTGT
TGGCGATGCTGCCGGACTGGTTGACCCCGTAACAGGAGAGGGCATCGCTTATGCAATCGAGAGTGGTTACCATGCTGCCG
TGGCCGTCATTGCGGCTGTTTCAGGCAAGAATTGCAATATCGAAGCCGTATATAAAAAAAAATACTACAGCGCGATCTCC
CGGGAGTTGGCTCGTGCCAATATGCTGCAGCAAGCTATATATTCCAGATATACGCAAGCCATCGTCATGCATGCTCTTTC
AAAATCCAGAACGATGCCATACCATTATATGGATCTGTTGTCGGGGGATTGCAGTTACAAGGAATTTATTTCGATCATAC
AGAAAAAAACGAAAAAACTGATTTTCATGGGTCGATGA

Upstream 100 bases:

>100_bases
ACTGCAGAGCCTGCCGGCGATCCCGCGAGCGGCGTTATCACGCTTGAATCGCGTCAATGACAGCGATAATTTTCAGCTTA
ATAAACGCCAAAGTCTGAAC

Downstream 100 bases:

>100_bases
GAGTTCGACGATGAGAATAGGAAAGTGCGCAGAGAATAAAAGAGTCCTGGCGGAAATAGCCTTTCAGCCAGCATGGCCTG
GAGTGAGGGATCGATCATGC

Product: geranylgeranyl reductase

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKNSYTCLVAGAGPSGTAAAYTLAKNGIDVCIVDKAIFPREKLCGGGLTRRTKNSFLDVFDLNWEDMYEYSANSALFYYK
GHVINKIEDYGELYFCDRIMFDNRLLDQATSRGVDVVPGERVDVIDTVEKTCKLASGRQIRYRYLIGADGVNSVVARQFV
SRRINRNRYAYALQVDIHKDDYGKKELTRPELYFGDVAMGYGWVFPKRNSYTVGICSRYSKTVDARKKMMDFFADRNGAP
FKGRLKGHYIPFGNYAERVVENDMILVGDAAGLVDPVTGEGIAYAIESGYHAAVAVIAAVSGKNCNIEAVYKKKYYSAIS
RELARANMLQQAIYSRYTQAIVMHALSKSRTMPYHYMDLLSGDCSYKEFISIIQKKTKKLIFMGR

Sequences:

>Translated_385_residues
MKNSYTCLVAGAGPSGTAAAYTLAKNGIDVCIVDKAIFPREKLCGGGLTRRTKNSFLDVFDLNWEDMYEYSANSALFYYK
GHVINKIEDYGELYFCDRIMFDNRLLDQATSRGVDVVPGERVDVIDTVEKTCKLASGRQIRYRYLIGADGVNSVVARQFV
SRRINRNRYAYALQVDIHKDDYGKKELTRPELYFGDVAMGYGWVFPKRNSYTVGICSRYSKTVDARKKMMDFFADRNGAP
FKGRLKGHYIPFGNYAERVVENDMILVGDAAGLVDPVTGEGIAYAIESGYHAAVAVIAAVSGKNCNIEAVYKKKYYSAIS
RELARANMLQQAIYSRYTQAIVMHALSKSRTMPYHYMDLLSGDCSYKEFISIIQKKTKKLIFMGR
>Mature_385_residues
MKNSYTCLVAGAGPSGTAAAYTLAKNGIDVCIVDKAIFPREKLCGGGLTRRTKNSFLDVFDLNWEDMYEYSANSALFYYK
GHVINKIEDYGELYFCDRIMFDNRLLDQATSRGVDVVPGERVDVIDTVEKTCKLASGRQIRYRYLIGADGVNSVVARQFV
SRRINRNRYAYALQVDIHKDDYGKKELTRPELYFGDVAMGYGWVFPKRNSYTVGICSRYSKTVDARKKMMDFFADRNGAP
FKGRLKGHYIPFGNYAERVVENDMILVGDAAGLVDPVTGEGIAYAIESGYHAAVAVIAAVSGKNCNIEAVYKKKYYSAIS
RELARANMLQQAIYSRYTQAIVMHALSKSRTMPYHYMDLLSGDCSYKEFISIIQKKTKKLIFMGR

Specific function: Probably Accepts Electrons From Ydiq/Ydir And Reduces A Quinone. [C]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. ChlP subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 43419; Mature: 43419

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSYTCLVAGAGPSGTAAAYTLAKNGIDVCIVDKAIFPREKLCGGGLTRRTKNSFLDVF
CCCCEEEEEECCCCCCCHHEEEECCCCCCEEEECCCCCCHHHHCCCCCCHHHHCCCEEEE
DLNWEDMYEYSANSALFYYKGHVINKIEDYGELYFCDRIMFDNRLLDQATSRGVDVVPGE
ECCHHHHHHHCCCCEEEEEECCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCC
RVDVIDTVEKTCKLASGRQIRYRYLIGADGVNSVVARQFVSRRINRNRYAYALQVDIHKD
CCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECC
DYGKKELTRPELYFGDVAMGYGWVFPKRNSYTVGICSRYSKTVDARKKMMDFFADRNGAP
CCCCCCCCCCCEEECCEECCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
FKGRLKGHYIPFGNYAERVVENDMILVGDAAGLVDPVTGEGIAYAIESGYHAAVAVIAAV
CCCCCCEEECCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHC
SGKNCNIEAVYKKKYYSAISRELARANMLQQAIYSRYTQAIVMHALSKSRTMPYHYMDLL
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SGDCSYKEFISIIQKKTKKLIFMGR
CCCCCHHHHHHHHHHHHHCEEEECC
>Mature Secondary Structure
MKNSYTCLVAGAGPSGTAAAYTLAKNGIDVCIVDKAIFPREKLCGGGLTRRTKNSFLDVF
CCCCEEEEEECCCCCCCHHEEEECCCCCCEEEECCCCCCHHHHCCCCCCHHHHCCCEEEE
DLNWEDMYEYSANSALFYYKGHVINKIEDYGELYFCDRIMFDNRLLDQATSRGVDVVPGE
ECCHHHHHHHCCCCEEEEEECCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCC
RVDVIDTVEKTCKLASGRQIRYRYLIGADGVNSVVARQFVSRRINRNRYAYALQVDIHKD
CCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECC
DYGKKELTRPELYFGDVAMGYGWVFPKRNSYTVGICSRYSKTVDARKKMMDFFADRNGAP
CCCCCCCCCCCEEECCEECCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
FKGRLKGHYIPFGNYAERVVENDMILVGDAAGLVDPVTGEGIAYAIESGYHAAVAVIAAV
CCCCCCEEECCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHC
SGKNCNIEAVYKKKYYSAISRELARANMLQQAIYSRYTQAIVMHALSKSRTMPYHYMDLL
CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
SGDCSYKEFISIIQKKTKKLIFMGR
CCCCCHHHHHHHHHHHHHCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9063468 [H]