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The map label for this gene is yfcC [H]

Identifier: 117920005

GI number: 117920005

Start: 1815829

End: 1817397

Strand: Direct

Name: yfcC [H]

Synonym: Shewana3_1557

Alternate gene names: 117920005

Gene position: 1815829-1817397 (Clockwise)

Preceding gene: 117920004

Following gene: 117920010

Centisome position: 36.52

GC content: 50.54

Gene sequence:

>1569_bases
ATGACGACTCCACCCTCGACGACTCAGCCAACAGAAGCAGCTCAGACTGCTATGGCACCATCCGCTTCACACGCTCCCTC
ATCCTTTCAAATGCCCGATACCTTAGTGATCATCTTTTTTGTGGCATTACTTGCGGGATTAATGACTTACTTTATTCCGA
TTGGGTCGTTTCAAACCCAAGAGGTGCATTATCTGGCCGAAGGTGTCGATAAAGCGAGGACAGTAGTCGACCCTAATTCA
TTTGCCTATCAATTGGATGATGCGGGCGAGCCTAAGCTGCAACCAGTGGCACTGTTTAAAGGCGAGGGCGGGGTTGGCTT
TTTTAACTTCGCCTTTGAGGGCTTAACCTCGGGTTCTAAATGGGGCAGCGCGATTGGCGTGATCATGTTTATGCTAGTGA
TTGGTGGCTCCTTCGGGGTGGTGATGGCCACAGGCACCATAGATAACGGCATCTTAAAGTTAATCGATAAAACCCGTGGC
AATGAAAAGTTATTCATTCCGGTGATATTTACGCTGTTTTCCCTCGGCGGCGCCGTGTTTGGCATGGGAGAAGAGGCCAT
TGCCTTCGCGATTATCATCTGCCCACTCATGATCCGTTTAGGGTACGACGGCATCACCACTGTGATGGTGACCTATGTGG
CGACCCAAATTGGTTTCGCTAGTTCTTGGATGAATCCTTTCAGTGTGGCAATTGCGCAGGGCATTGCGGGGATCCCGGTT
CTTTCAGGCAGTGAGTTTCGCTTCCCTATGTGGCTCGGATTCACATTGCTTGGCATCGTTTTTACCATGCGTTACGCCCA
TCGCATTCAACAGCAACCAAGTATTTCCCATAGCTATCAGTCCGATGCTTATTTCCGTGAGCACCATGCTAATACGAAGC
TCGAGAGCCGCTTTAATCTTGGGGATGTGTTGGTGCTGTTGTTGTTAGTGTTAACTATGGTGTGGGTGATTTGGGGCGTT
GTGGCAAAAGCGTGGTTTATCCCTGAGATCGCCAGCCAGTTTTTTACCATGGGTATGGTGGCCGGCGTTATTGGCTGCGT
GTTTAAGCTCAATGGCTTAACGCTTAACAAGGTCGCGCAGAGTTTTAAGGATGGCGCTAAAACCATGTTAGAGCCAGCCC
TTTTAGTGGGATGTGCCTCGGGGATTTTACTGCTCCTTGGCGGCGGTACACCGACTGAACCGAGTGTGCTTAATTCGATT
CTGAACAGCGCTGGCGGGGTGATTGGTCATCTGCCGGATGCACTTTCGGCGTGGTTTATGTTGTTGTTTCAATCCGTATT
CAACTTTTTTGTGACCTCGGGTTCAGGGCAGGCCGCATTGACTATGCCACTGATGGCACCTCTCTCTGATATCGTCGGTG
TGACGCGCCAAGTGGCGGTATTGGCCTTTCAGCTAGGCGATGGCCTCACCAATATCATAGTGCCCACCTCAGCGTCTTTA
ATGGCGACCCTTGGCGTATGCCGCGTCGATTGGGGCAACTGGCTGAAATTTGTGTGGCGTTTTATGTTGCTGCTGATGTT
GGTCTCAAGCGTGCTGGTGATTGGCGCGCACTATCTTGGATTTAACTAG

Upstream 100 bases:

>100_bases
TTTTGCGTATTCATGCAAGCGAATGAAGATTTTATGTACTGATTTACAGCGCTTTAGTTTATAGTGCGGCCTTTTCCGTT
TGACATAAAATGGCGCATCT

Downstream 100 bases:

>100_bases
GTACGGGGATTTAACTAGGTGCGCGGATTTAGCTGGGCGCTGGGGTTTATCTTAAGCTGCGGGTAAATAGGCGCTAAAGG
CTAACTTAGTTATTTGGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 521

Protein sequence:

>522_residues
MTTPPSTTQPTEAAQTAMAPSASHAPSSFQMPDTLVIIFFVALLAGLMTYFIPIGSFQTQEVHYLAEGVDKARTVVDPNS
FAYQLDDAGEPKLQPVALFKGEGGVGFFNFAFEGLTSGSKWGSAIGVIMFMLVIGGSFGVVMATGTIDNGILKLIDKTRG
NEKLFIPVIFTLFSLGGAVFGMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQIGFASSWMNPFSVAIAQGIAGIPV
LSGSEFRFPMWLGFTLLGIVFTMRYAHRIQQQPSISHSYQSDAYFREHHANTKLESRFNLGDVLVLLLLVLTMVWVIWGV
VAKAWFIPEIASQFFTMGMVAGVIGCVFKLNGLTLNKVAQSFKDGAKTMLEPALLVGCASGILLLLGGGTPTEPSVLNSI
LNSAGGVIGHLPDALSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLSDIVGVTRQVAVLAFQLGDGLTNIIVPTSASL
MATLGVCRVDWGNWLKFVWRFMLLLMLVSSVLVIGAHYLGFN

Sequences:

>Translated_522_residues
MTTPPSTTQPTEAAQTAMAPSASHAPSSFQMPDTLVIIFFVALLAGLMTYFIPIGSFQTQEVHYLAEGVDKARTVVDPNS
FAYQLDDAGEPKLQPVALFKGEGGVGFFNFAFEGLTSGSKWGSAIGVIMFMLVIGGSFGVVMATGTIDNGILKLIDKTRG
NEKLFIPVIFTLFSLGGAVFGMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQIGFASSWMNPFSVAIAQGIAGIPV
LSGSEFRFPMWLGFTLLGIVFTMRYAHRIQQQPSISHSYQSDAYFREHHANTKLESRFNLGDVLVLLLLVLTMVWVIWGV
VAKAWFIPEIASQFFTMGMVAGVIGCVFKLNGLTLNKVAQSFKDGAKTMLEPALLVGCASGILLLLGGGTPTEPSVLNSI
LNSAGGVIGHLPDALSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLSDIVGVTRQVAVLAFQLGDGLTNIIVPTSASL
MATLGVCRVDWGNWLKFVWRFMLLLMLVSSVLVIGAHYLGFN
>Mature_521_residues
TTPPSTTQPTEAAQTAMAPSASHAPSSFQMPDTLVIIFFVALLAGLMTYFIPIGSFQTQEVHYLAEGVDKARTVVDPNSF
AYQLDDAGEPKLQPVALFKGEGGVGFFNFAFEGLTSGSKWGSAIGVIMFMLVIGGSFGVVMATGTIDNGILKLIDKTRGN
EKLFIPVIFTLFSLGGAVFGMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQIGFASSWMNPFSVAIAQGIAGIPVL
SGSEFRFPMWLGFTLLGIVFTMRYAHRIQQQPSISHSYQSDAYFREHHANTKLESRFNLGDVLVLLLLVLTMVWVIWGVV
AKAWFIPEIASQFFTMGMVAGVIGCVFKLNGLTLNKVAQSFKDGAKTMLEPALLVGCASGILLLLGGGTPTEPSVLNSIL
NSAGGVIGHLPDALSAWFMLLFQSVFNFFVTSGSGQAALTMPLMAPLSDIVGVTRQVAVLAFQLGDGLTNIIVPTSASLM
ATLGVCRVDWGNWLKFVWRFMLLLMLVSSVLVIGAHYLGFN

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycgA [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=505, Percent_Identity=63.5643564356436, Blast_Score=639, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 56020; Mature: 55888

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPPSTTQPTEAAQTAMAPSASHAPSSFQMPDTLVIIFFVALLAGLMTYFIPIGSFQTQ
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EVHYLAEGVDKARTVVDPNSFAYQLDDAGEPKLQPVALFKGEGGVGFFNFAFEGLTSGSK
HHHHHHHHHHHHHEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCH
WGSAIGVIMFMLVIGGSFGVVMATGTIDNGILKLIDKTRGNEKLFIPVIFTLFSLGGAVF
HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCHHC
GMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQIGFASSWMNPFSVAIAQGIAGIPV
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEE
LSGSEFRFPMWLGFTLLGIVFTMRYAHRIQQQPSISHSYQSDAYFREHHANTKLESRFNL
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHCCCH
GDVLVLLLLVLTMVWVIWGVVAKAWFIPEIASQFFTMGMVAGVIGCVFKLNGLTLNKVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SFKDGAKTMLEPALLVGCASGILLLLGGGTPTEPSVLNSILNSAGGVIGHLPDALSAWFM
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCCHHCCHHHHHHHHH
LLFQSVFNFFVTSGSGQAALTMPLMAPLSDIVGVTRQVAVLAFQLGDGLTNIIVPTSASL
HHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
MATLGVCRVDWGNWLKFVWRFMLLLMLVSSVLVIGAHYLGFN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTPPSTTQPTEAAQTAMAPSASHAPSSFQMPDTLVIIFFVALLAGLMTYFIPIGSFQTQ
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EVHYLAEGVDKARTVVDPNSFAYQLDDAGEPKLQPVALFKGEGGVGFFNFAFEGLTSGSK
HHHHHHHHHHHHHEEECCCCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCH
WGSAIGVIMFMLVIGGSFGVVMATGTIDNGILKLIDKTRGNEKLFIPVIFTLFSLGGAVF
HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCHHC
GMGEEAIAFAIIICPLMIRLGYDGITTVMVTYVATQIGFASSWMNPFSVAIAQGIAGIPV
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEE
LSGSEFRFPMWLGFTLLGIVFTMRYAHRIQQQPSISHSYQSDAYFREHHANTKLESRFNL
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHCCCH
GDVLVLLLLVLTMVWVIWGVVAKAWFIPEIASQFFTMGMVAGVIGCVFKLNGLTLNKVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
SFKDGAKTMLEPALLVGCASGILLLLGGGTPTEPSVLNSILNSAGGVIGHLPDALSAWFM
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCCHHCCHHHHHHHHH
LLFQSVFNFFVTSGSGQAALTMPLMAPLSDIVGVTRQVAVLAFQLGDGLTNIIVPTSASL
HHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH
MATLGVCRVDWGNWLKFVWRFMLLLMLVSSVLVIGAHYLGFN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 7883769 [H]