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The map label for this gene is tnpA1 [H]

Identifier: 117919975

GI number: 117919975

Start: 1777531

End: 1777968

Strand: Direct

Name: tnpA1 [H]

Synonym: Shewana3_1527

Alternate gene names: 117919975

Gene position: 1777531-1777968 (Clockwise)

Preceding gene: 117919974

Following gene: 117919977

Centisome position: 35.75

GC content: 39.5

Gene sequence:

>438_bases
ATGGGCGATTACAGAAGTTCATCACATGTTTACTGGCGTTGTAAATATCATATCGTTTGGACGCCTAAGTACAGATTCAA
AATTCTAAAAGGTAACCTTGGTAAAGAGCTCTACAGGTCGATTTATATTCTATGCAATATGAAAAGTTGTGAGGTCTTAG
AATTAAACGTCCAGATAGATCATGTGCATCTAGTCGTGATAATTCCCCCAAAGTTGTCAGTATCCACATTAATGGGGATA
TTGAAGGGTAGGAGCGCAATAAGGCTTTTTAACAAATTCCCTCATGCTCGCAAGAAGTTATGGGGAAATAGCTTTTGGGC
GAGGGGTTATTTTGTTGATACGGTAGGCGTAAATGAGGAAATCATAAGACGCTATGTTCGCCATCAAGATAAGCAAGATC
TAGAGCATGATGCTCAATTGTCGCTACAGATGAAGTAG

Upstream 100 bases:

>100_bases
GCCTCTGGCGGTGGTGATTGTCCCTTAAGGCTATAGCCTGAATAACGCCCATGTTAAAAGAGACCTTCTTATTCACCACA
AGTAAGAGGAAACGAGAAAC

Downstream 100 bases:

>100_bases
GTGTAAGGAAATAGCCCCTTCCAGGGGCAAATCAAAGCCGCCTTCTAAGAAGGCGGATTCTTTACTTTTATCTATTCGTG
CGTTAGAGCTGCATTGCTTA

Product: transposase IS200-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MGDYRSSSHVYWRCKYHIVWTPKYRFKILKGNLGKELYRSIYILCNMKSCEVLELNVQIDHVHLVVIIPPKLSVSTLMGI
LKGRSAIRLFNKFPHARKKLWGNSFWARGYFVDTVGVNEEIIRRYVRHQDKQDLEHDAQLSLQMK

Sequences:

>Translated_145_residues
MGDYRSSSHVYWRCKYHIVWTPKYRFKILKGNLGKELYRSIYILCNMKSCEVLELNVQIDHVHLVVIIPPKLSVSTLMGI
LKGRSAIRLFNKFPHARKKLWGNSFWARGYFVDTVGVNEEIIRRYVRHQDKQDLEHDAQLSLQMK
>Mature_144_residues
GDYRSSSHVYWRCKYHIVWTPKYRFKILKGNLGKELYRSIYILCNMKSCEVLELNVQIDHVHLVVIIPPKLSVSTLMGIL
KGRSAIRLFNKFPHARKKLWGNSFWARGYFVDTVGVNEEIIRRYVRHQDKQDLEHDAQLSLQMK

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 17208; Mature: 17077

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDYRSSSHVYWRCKYHIVWTPKYRFKILKGNLGKELYRSIYILCNMKSCEVLELNVQID
CCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCHHHHHHEEEEECCCCCEEEEEEEEEE
HVHLVVIIPPKLSVSTLMGILKGRSAIRLFNKFPHARKKLWGNSFWARGYFVDTVGVNEE
EEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCEEECCEEEEECCCCHH
IIRRYVRHQDKQDLEHDAQLSLQMK
HHHHHHHCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure 
GDYRSSSHVYWRCKYHIVWTPKYRFKILKGNLGKELYRSIYILCNMKSCEVLELNVQID
CCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCHHHHHHEEEEECCCCCEEEEEEEEEE
HVHLVVIIPPKLSVSTLMGILKGRSAIRLFNKFPHARKKLWGNSFWARGYFVDTVGVNEE
EEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCEEECCEEEEECCCCHH
IIRRYVRHQDKQDLEHDAQLSLQMK
HHHHHHHCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]