| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117919977
Identifier: 117919977
GI number: 117919977
Start: 1779065
End: 1781551
Strand: Direct
Name: 117919977
Synonym: Shewana3_1529
Alternate gene names: NA
Gene position: 1779065-1781551 (Clockwise)
Preceding gene: 117919975
Following gene: 117919978
Centisome position: 35.78
GC content: 49.86
Gene sequence:
>2487_bases ATGAAAAGACTCATTTTGTGTGTTGCGATTGCATCAGCACTGGGCCTCACAGGATGTGGCGAGGACAGTTATAACGAACT CAAGGATAAGACAGAGCCGCTCATCCCTGAATCCCATATGGTGTTTGACCCCGCGAATGCTAAAGTGCCTTTGCCTAATG ATTTGCTGTTCAGCGGCACCACGGATGGCACCTTATCAATCCCGGGTGAAAGTTCGGGGAACTATGTCGATCCGCAAATT GCCCTTGGTGCCTTAGATGGATGGTCAACCACATCACCCATTTCAATTGATATCGATTTAGCAAAAGACCATGATGGCAC CCAACTGACCCTGATGGCGGCATCGGTTGCTCAACCGGGCGCAGTGAGAATGTTTGAGGCCACTGTGGGGGGGCCGTTGT CATCGGATCCTGAATGTACAACTAAGCCGTCAGTATCTGCCTGTAAAGTCGGCGACGAATTGCAATTTGGTGTGGATTTT GTGTCGATGGCATCGGGTAATAAAGTCGTTATCGTGCCACTCAAACCGCTTAAAGCCGGTCAGTCTTATATTTATGCGAC AACCAAGTTAATCCAAGATTCAGAGGGACGAGGCATTGCCCCTTCAACGACCTATGGTACGTTGAAGATGGATATCAACA CCTTACCCTTAGAAACGCCTGACCAATTGATGCTACAAACCTTAGTCAACAGCTATGAGAAAGGGATTGCAGCGGCACAC AATGTCGATACTTCAACCATTACCTATTCAGGCTTGTTTACCACTCAATCGGTTGCAAACGTCTATGAAACCACAAAACT CTTGATGGCACAGGGCGCACCTTATGCGCCAAGTTTTGCGCAAATGCCAACGCCTACAGGGTTTACAGTAGCAGATATGT TAAGGTTACCACCTAATGCAAATGATCCTGTCTATGTGGTTTCAAGCTTAGCCGACGTTTATACCGCTAAGATTAAATTG CCAATTTACGGTGACTGCTCCTCAGTCAGCTGCCTGTCATCGGCAGGTCAGCCGCTGATCAATGGCCGCTGGAAAGCCCA AGGCGATAGCCCAGTTTCGGTATTATTAGCGCTGCAAGCGGGTACCTTAAGTCAAACCAACTTTGGTATGCAGGCGGTGG CCAATGGGATTGCTAACCCTGCCGATGCGTTAGCGAATCCTTCTTTGATGGCCGGTAAAACCTGGTTGCTAGATGATGGA ACGGCTGCGGATAAAACCAAGCATTTAACCAAATTTAACCCCATCCCTGCGATTAAAGGTTATGAAACGGTACCTGTACT GATTTCTATGCCGAATGCGACCAAACTCGCGGCCTTCTATCAGCAACAAGGTTTAACCTTTACACCACCGACTTCTGGCT GGCCAACGACGATTGCATTGCATGGTTTAGGCGGCGGTAAGGAAATGTCATTAGCCTATGCGGGTAGCTATGCCGCTATG GGTGTGGCAACGGTGGCCATCGATATGCCTTTGCATGGTGCCCGCTCGTTCGATGCCAATGGTGATGGGGTTTACGAAGT TTCGGCAACCGACCCTTCCTTCGGTAACGTGATTGGTACACCTGATGCCTTTAAAAATGGTAATCCACTCGTCTTCGTGA ATATCTCAAGCACGCTGTCGGTGCGGGATAACTTCCGTCAGGCCACTATGGATCACCTTGGCGTGCGTTTAGCCTTAACA GGTTTAGCGCAGGGGCTTGCACAGGCAGGACAGAAGCAATTATTTGATATTTCCAAGATTAGTGCACAGGGCTTAAGTTT GGGTGCGATTGTCGGTACCGACTTTGCGACTTATGCCAGCACGGGCATGAAAAATCCAAGCACGGGCGAAGCGCTACCTA ACCCTTATGCCATCAATGCGGTCTCTCTGGCGGCGCCAGCGGGTGGTTTAGCGGGTGCATTTGCCGGTTCTGCGACCTTT GGACCAGTGTTGTTTAGCAACGTCACTGCCTCATCGACGTTCCAAGCATTAGTGGATAAGGCCAATACTGCGGGATACGA GCCAGGCAGCCCTGAATATGCGGCATTAGTACAAGGGGTTTACGCGCAGTTTATTCCAACCTTTGCCTTTGCGGTGCAAA CGGCGGTGGATTCGGCGGATCCGGTTAACCATGCAGGCATGTTGAAAGAAACAGGATTACCCGTACATTTAATCGAAATT GCGGGTGATGGTAACGGCAACTTACCTGACCAAGTGTTACCTAATCGCGTGGATAACTTCCCACTCTCAGGCACTGAGCC GTTGATTTCGGCAATCGGTCTGCCTTGTGTGGATGCAACCACCAAAGGTTCTGGTGCGGTGCGTTTTGCTAAGGGTCATC ATAGCTCAATTGTTGATCCAAGCGAGAAGAGTTCAACGGATGGTATGGCTGCTGCGGCAACGGTTGAGATGCAGACGCAA GTGGCGACCTATGCATGGACTGCAGGTAAGGGTGAAGCGACTATTTTCGTCACTGATCCAAGCGTGATCGCGACCTGTTC TAACTAG
Upstream 100 bases:
>100_bases TTAGGGGCTAACATAAGCCCTATTAGTCATAGCTTTTGCGCTATTGTGACTAATTTCTTGGGGAAAACAAAACTATTACA ACAAGATTTGGGGAAAAAAA
Downstream 100 bases:
>100_bases TCGCGTGTAAAATCCTAAAAACCCAGCCTTTGCTGGGTTTTTTTATGGCGCTTTAGGCTGTTAGAATAGCGCGCACTAAA CCGGATCACCTTAGGCCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Extracellular Lipase; MECDP-Synthase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Superfamily Protein; Extracellular Lipase Pla-1/Cef Family; Lipoprotein
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MKRLILCVAIASALGLTGCGEDSYNELKDKTEPLIPESHMVFDPANAKVPLPNDLLFSGTTDGTLSIPGESSGNYVDPQI ALGALDGWSTTSPISIDIDLAKDHDGTQLTLMAASVAQPGAVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDF VSMASGNKVVIVPLKPLKAGQSYIYATTKLIQDSEGRGIAPSTTYGTLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGFTVADMLRLPPNANDPVYVVSSLADVYTAKIKL PIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDG TAADKTKHLTKFNPIPAIKGYETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAM GVATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALT GLAQGLAQAGQKQLFDISKISAQGLSLGAIVGTDFATYASTGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATF GPVLFSNVTASSTFQALVDKANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKETGLPVHLIEI AGDGNGNLPDQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPSEKSSTDGMAAAATVEMQTQ VATYAWTAGKGEATIFVTDPSVIATCSN
Sequences:
>Translated_828_residues MKRLILCVAIASALGLTGCGEDSYNELKDKTEPLIPESHMVFDPANAKVPLPNDLLFSGTTDGTLSIPGESSGNYVDPQI ALGALDGWSTTSPISIDIDLAKDHDGTQLTLMAASVAQPGAVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDF VSMASGNKVVIVPLKPLKAGQSYIYATTKLIQDSEGRGIAPSTTYGTLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGFTVADMLRLPPNANDPVYVVSSLADVYTAKIKL PIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDG TAADKTKHLTKFNPIPAIKGYETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAM GVATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALT GLAQGLAQAGQKQLFDISKISAQGLSLGAIVGTDFATYASTGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATF GPVLFSNVTASSTFQALVDKANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKETGLPVHLIEI AGDGNGNLPDQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPSEKSSTDGMAAAATVEMQTQ VATYAWTAGKGEATIFVTDPSVIATCSN >Mature_828_residues MKRLILCVAIASALGLTGCGEDSYNELKDKTEPLIPESHMVFDPANAKVPLPNDLLFSGTTDGTLSIPGESSGNYVDPQI ALGALDGWSTTSPISIDIDLAKDHDGTQLTLMAASVAQPGAVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDF VSMASGNKVVIVPLKPLKAGQSYIYATTKLIQDSEGRGIAPSTTYGTLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGFTVADMLRLPPNANDPVYVVSSLADVYTAKIKL PIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDG TAADKTKHLTKFNPIPAIKGYETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAM GVATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALT GLAQGLAQAGQKQLFDISKISAQGLSLGAIVGTDFATYASTGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATF GPVLFSNVTASSTFQALVDKANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKETGLPVHLIEI AGDGNGNLPDQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPSEKSSTDGMAAAATVEMQTQ VATYAWTAGKGEATIFVTDPSVIATCSN
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85667; Mature: 85667
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLILCVAIASALGLTGCGEDSYNELKDKTEPLIPESHMVFDPANAKVPLPNDLLFSGT CCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEECC TDGTLSIPGESSGNYVDPQIALGALDGWSTTSPISIDIDLAKDHDGTQLTLMAASVAQPG CCCEEECCCCCCCCEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCC AVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDFVSMASGNKVVIVPLKPLKAG CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC QSYIYATTKLIQDSEGRGIAPSTTYGTLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH CEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHC NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGFTVADMLRLPPNA CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC NDPVYVVSSLADVYTAKIKLPIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQA CCCEEEHHHHHHHEEEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEEEEEC GTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGTAADKTKHLTKFNPIPAIKG CCCCCCCCCHHHHHHHCCCHHHHHCCCCEECCCEEEECCCCCCCHHHHHHCCCCCCCCCC YETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAM CCCEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCHHHH GVATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLS EEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEE VRDNFRQATMDHLGVRLALTGLAQGLAQAGQKQLFDISKISAQGLSLGAIVGTDFATYAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH TGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFGPVLFSNVTASSTFQALVDK CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCHHHHCCCCCHHHHHHHHHH ANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKETGLPVHLIEI HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEE AGDGNGNLPDQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDP EECCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC SEKSSTDGMAAAATVEMQTQVATYAWTAGKGEATIFVTDPSVIATCSN CCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEECCCEEEEECC >Mature Secondary Structure MKRLILCVAIASALGLTGCGEDSYNELKDKTEPLIPESHMVFDPANAKVPLPNDLLFSGT CCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEECC TDGTLSIPGESSGNYVDPQIALGALDGWSTTSPISIDIDLAKDHDGTQLTLMAASVAQPG CCCEEECCCCCCCCEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCC AVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDFVSMASGNKVVIVPLKPLKAG CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCC QSYIYATTKLIQDSEGRGIAPSTTYGTLKMDINTLPLETPDQLMLQTLVNSYEKGIAAAH CEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCHHHC NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPTGFTVADMLRLPPNA CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC NDPVYVVSSLADVYTAKIKLPIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQA CCCEEEHHHHHHHEEEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEEEEEC GTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGTAADKTKHLTKFNPIPAIKG CCCCCCCCCHHHHHHHCCCHHHHHCCCCEECCCEEEECCCCCCCHHHHHHCCCCCCCCCC YETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAM CCCEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCHHHH GVATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLS EEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEE VRDNFRQATMDHLGVRLALTGLAQGLAQAGQKQLFDISKISAQGLSLGAIVGTDFATYAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH TGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFGPVLFSNVTASSTFQALVDK CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCHHHHCCCCCHHHHHHHHHH ANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKETGLPVHLIEI HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEE AGDGNGNLPDQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDP EECCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCC SEKSSTDGMAAAATVEMQTQVATYAWTAGKGEATIFVTDPSVIATCSN CCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA