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The map label for this gene is ompS2 [H]

Identifier: 117919935

GI number: 117919935

Start: 1732244

End: 1733413

Strand: Direct

Name: ompS2 [H]

Synonym: Shewana3_1487

Alternate gene names: 117919935

Gene position: 1732244-1733413 (Clockwise)

Preceding gene: 117919934

Following gene: 117919937

Centisome position: 34.84

GC content: 48.8

Gene sequence:

>1170_bases
ATGAAAAAGAAATTGCTAGCAGTGATGATCCCTGCGGTGCTGTTGTCTGGTACAACGCAAGCGGTCGAGCTGTATAACGA
TCAAACCAATAGCGTCAATATGATGGGCTGGCTAGGCTTTGCGGCGTTAAACGATGGCCACGAAACTTCAGTAATTGATA
ACTTTTCCCGCGTGGGATTTCGTTTCGACCGCCAAGAGAAAAATGGTTGGCGCTCCTTTGCCCATACCGAATGGGGCATT
AACATGGTCACCAGTGACGATGGCCTGATCTATACCCAAGGTCAAGGTGGTGGTCAGTTATCGGCTTCAAAAACCTCAGA
TTTCCTCTTTAACCGTTTAGGTTATGTCGGCATGTCGCACGACAAATGGGGCTCGCTCACCTTTGGTAAGCAGTGGGGGG
CTTATTATGATGTGGCTTACACCACTGACGTGCTCAATGCCTTTACCGGCTGGTCTGTCGGTGCTTATACCTTTGGCGAT
GGCGGCCTCACTGGCGCGGGGCGTGCCGATGCAGCGCTGCAATACCGTAATACCTTTGGCAATCTGCATATCGCGGTGCA
ATACGCCTCTAAGCAAAATAGCGATGTGGCGCTCTATGACAATTTAGGAAACGCCTTAAACGATGGGTCTGAGCTGAGCT
TCGATCCTAGCTATGGTGCGAGTGCTACTTACTATTTCACCGACAAATTTAAGGTGTTAGCGGGCTTTAACCGCGGTGAC
TTCACCGGCAATCTTGCGGGTAAAGACGTCGATAATACCAATCAAATCATCGGTATCGGCGCCCAATACGGCAGCTTCTA
CCAATATGCGCCGGGTCGTGATGCCGACGGCCTGTATGTCGGTTTTAACGCCCATAAGAGTGAGCAAAACGAGTTAGTGG
GTGGCGATCTCTACGACTCAACTGGCGCCGAATTTATTGTTGCCTATCACTACGATAACGGATTCGTACCTAGCTTATTG
CTGACTTACCAAGATTTGGACACCGATGAAAACACCGTCATCCAAGGTAAATGGACCCGCCAATTTGCCGTGTTAGGCCT
GCATTATCGTTATAGCCGCGACACTATTATGTATGCTGAAGCCAAAATCGATTTCAGCGATATGGACGATAAAGCCTACG
AAGATCTGCAGGATAACAACTATGCCGTTGGTATTCGTTATTTCTTCTAA

Upstream 100 bases:

>100_bases
CCGTGGCATGCAAACTGCTGTGTGTTGGCTGGAGAATATAATAAGCCAATTAAATCATATGATTATTTATGATTTAGCTG
AATTAAAAGGTGTAGATGAT

Downstream 100 bases:

>100_bases
GTTCGACGACTGATTGCGCTAAAAAAGCACATAAAGCAAAGGCCACATATTGTGGCCTTTTCCATAACTATCCATTTCTT
ATCAATGCATTACACAATCC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKKKLLAVMIPAVLLSGTTQAVELYNDQTNSVNMMGWLGFAALNDGHETSVIDNFSRVGFRFDRQEKNGWRSFAHTEWGI
NMVTSDDGLIYTQGQGGGQLSASKTSDFLFNRLGYVGMSHDKWGSLTFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGD
GGLTGAGRADAALQYRNTFGNLHIAVQYASKQNSDVALYDNLGNALNDGSELSFDPSYGASATYYFTDKFKVLAGFNRGD
FTGNLAGKDVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDSTGAEFIVAYHYDNGFVPSLL
LTYQDLDTDENTVIQGKWTRQFAVLGLHYRYSRDTIMYAEAKIDFSDMDDKAYEDLQDNNYAVGIRYFF

Sequences:

>Translated_389_residues
MKKKLLAVMIPAVLLSGTTQAVELYNDQTNSVNMMGWLGFAALNDGHETSVIDNFSRVGFRFDRQEKNGWRSFAHTEWGI
NMVTSDDGLIYTQGQGGGQLSASKTSDFLFNRLGYVGMSHDKWGSLTFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGD
GGLTGAGRADAALQYRNTFGNLHIAVQYASKQNSDVALYDNLGNALNDGSELSFDPSYGASATYYFTDKFKVLAGFNRGD
FTGNLAGKDVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDSTGAEFIVAYHYDNGFVPSLL
LTYQDLDTDENTVIQGKWTRQFAVLGLHYRYSRDTIMYAEAKIDFSDMDDKAYEDLQDNNYAVGIRYFF
>Mature_389_residues
MKKKLLAVMIPAVLLSGTTQAVELYNDQTNSVNMMGWLGFAALNDGHETSVIDNFSRVGFRFDRQEKNGWRSFAHTEWGI
NMVTSDDGLIYTQGQGGGQLSASKTSDFLFNRLGYVGMSHDKWGSLTFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGD
GGLTGAGRADAALQYRNTFGNLHIAVQYASKQNSDVALYDNLGNALNDGSELSFDPSYGASATYYFTDKFKVLAGFNRGD
FTGNLAGKDVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDSTGAEFIVAYHYDNGFVPSLL
LTYQDLDTDENTVIQGKWTRQFAVLGLHYRYSRDTIMYAEAKIDFSDMDDKAYEDLQDNNYAVGIRYFF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787160, Length=407, Percent_Identity=24.8157248157248, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788544, Length=405, Percent_Identity=24.4444444444444, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786436, Length=412, Percent_Identity=25.2427184466019, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 43093; Mature: 43093

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLLAVMIPAVLLSGTTQAVELYNDQTNSVNMMGWLGFAALNDGHETSVIDNFSRVGF
CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCE
RFDRQEKNGWRSFAHTEWGINMVTSDDGLIYTQGQGGGQLSASKTSDFLFNRLGYVGMSH
EEECCCCCCHHHHCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHCCCCCCC
DKWGSLTFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGDGGLTGAGRADAALQYRNTFG
CCCCCEEECCCCCCEEEEEEHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCC
NLHIAVQYASKQNSDVALYDNLGNALNDGSELSFDPSYGASATYYFTDKFKVLAGFNRGD
CEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCEEEEECCCCCC
FTGNLAGKDVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDS
CCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
TGAEFIVAYHYDNGFVPSLLLTYQDLDTDENTVIQGKWTRQFAVLGLHYRYSRDTIMYAE
CCCEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEEEEECCCEEEEEE
AKIDFSDMDDKAYEDLQDNNYAVGIRYFF
EEECCCCCCCHHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure
MKKKLLAVMIPAVLLSGTTQAVELYNDQTNSVNMMGWLGFAALNDGHETSVIDNFSRVGF
CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCE
RFDRQEKNGWRSFAHTEWGINMVTSDDGLIYTQGQGGGQLSASKTSDFLFNRLGYVGMSH
EEECCCCCCHHHHCCCCCCCEEEECCCCEEEEECCCCCEECCCCHHHHHHHHHCCCCCCC
DKWGSLTFGKQWGAYYDVAYTTDVLNAFTGWSVGAYTFGDGGLTGAGRADAALQYRNTFG
CCCCCEEECCCCCCEEEEEEHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEECCCC
NLHIAVQYASKQNSDVALYDNLGNALNDGSELSFDPSYGASATYYFTDKFKVLAGFNRGD
CEEEEEEECCCCCCCEEEEECCCCCCCCCCCEEECCCCCCEEEEEEECCEEEEECCCCCC
FTGNLAGKDVDNTNQIIGIGAQYGSFYQYAPGRDADGLYVGFNAHKSEQNELVGGDLYDS
CCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
TGAEFIVAYHYDNGFVPSLLLTYQDLDTDENTVIQGKWTRQFAVLGLHYRYSRDTIMYAE
CCCEEEEEEEECCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEEEEEEECCCEEEEEE
AKIDFSDMDDKAYEDLQDNNYAVGIRYFF
EEECCCCCCCHHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]