| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is ifcA [H]
Identifier: 117919937
GI number: 117919937
Start: 1735195
End: 1736748
Strand: Direct
Name: ifcA [H]
Synonym: Shewana3_1489
Alternate gene names: 117919937
Gene position: 1735195-1736748 (Clockwise)
Preceding gene: 117919935
Following gene: 117919938
Centisome position: 34.9
GC content: 53.99
Gene sequence:
>1554_bases ATGAGTAAAACCCAAGGTATTAATTCGGGGCGTCGACAATTATTAAAGGGCGGTATGGTCATGGCCGCAGGGCTCGGGGC GAGTATCGCGTTGCCTAGCTCTGCCAGCTGTGACTTGGCTCCTATTAACTTCGATGAAATTGTCGATGTGCTCGTGGTAG GCAGCGGTTTTGCGGGCATGTCTGCGGCGTTGCAGGCCAGAGAAGCCGGCGTGAGCGTGATGGTTATCGATAAGATGCCC GTGTTTGGTGGCAACTCGACCATCAACGGCGGCGCGATGGCGGTAGCAGGTTCTGCCCTACAAAAGCAGGCAGGGATTGA AGATTCGGTCGATGCCATGGTGGCGGACATGCTGCGGGCTGGTCGCGGCATGAACGATGTGGAAATGCTCAAACTGGTAT GTAACGGCACCGCAGAATCCTGCCAGTGGCTGATCGATTACGGCGTGAACTGGAAACCTTTTGTACAGCACTTTGGCGGC CACTCGGTACAACGAGTGCTACAAACCGTTGAAAGTTCAGGCGCTGGCATTATTCGCCCCCTAATTAAAGCTGCCCGAGA CAAGGGCGTCATCATGAAAAATCAGACCAAGCTCGAAGGCTTTGTACAAGATGAGGCCGGACGGGTGATCGGTGTCGAAG TTCGCGAAGGTTTTTATTTTCCCAATGAGCGCACGGGTAAAATATCTAGAATCGGTGCGCGCCGTGGCGTGATTATGGCG ACTGGCGGTTTTGGTCGCGATATTGAATACCGCATGATGCAATTACCTGAGTTAAATAGTGATTTAGATTCAACCAACCA TGCAGGTGCTACCTCTGAAGCGCTCAAGCAGATGATGCTCATTGGGGCCAATCCCATTCATTTAGACCAAATTCAGCTTG GCCCATGGGCATCCCCCGACGAGAAGGGCTTTGGCACGGCTTCCCAGTTCAACACTATCGCCACCTATCCCCACGGCATT GTGGTGGATGTGCGCACCGGAGAGCGTTTCTTCAATGAATTAGCCGACCGTAAAGCCCGTGCAGACGCCATCATGACCCG ACGGGATGAGAAAGGACAGCCTGTCTATCCCATTGGTTTTACTAATGCTGCCGGAGCCAGTAAGGCACAGACCTTAGATT GGGGTCTGAAATACAAGGTCATCAGCAAGGCCGAGACCTTAGACGAACTGGCCACGATTTACGGCATGCCAGCTAAGGCA TTAAAGGCGCAGGTGGCGCGTTGGAATGAAGCGGTAAAAACAGGGGTAGATAAAGAGTTCGACCGCCCTATGCAGGAGGC GATAGTGCTCGATAAAGGGCCTTGGTATGCGGTGCGCATGTGGCCGAAGGTGCATTACTGCATGGGCGGCGTGAAGGTGA ATACCCAATCCGAAGTGCTGCATTTGGTCAGTAATAAAGCCATTCCCGGATTATATGCCGCAGGCGAAGCCACGGGCGGT ATCCATGGTGCCAGCCGTTTAGGCGCCTGTGCTGTGGCCGAAGGGGTTGTCACTGGGCGTAATGCCGGTCGTAACTGCGC CGCGGCGAGTGCTGTGACGCTCAAGCAAGTTTAG
Upstream 100 bases:
>100_bases GCAATCAAAGTTCACCGCATAAATACCTCTTTTTAGGTGCTTGGCACAGCATCTGCACTTTCACGCTGACAAGTTCCAAT GATTATTGAAGGAAATCAGC
Downstream 100 bases:
>100_bases TTTTTATCAAAAATAATAAAATGTTGGAGAATGATAATGAATAAATCCATATTGATGGCCTCACTCACCTTGAGTCTACT TTCAGGCAGCGCGCTCGCGA
Product: flavocytochrome c
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MSKTQGINSGRRQLLKGGMVMAAGLGASIALPSSASCDLAPINFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVIDKMP VFGGNSTINGGAMAVAGSALQKQAGIEDSVDAMVADMLRAGRGMNDVEMLKLVCNGTAESCQWLIDYGVNWKPFVQHFGG HSVQRVLQTVESSGAGIIRPLIKAARDKGVIMKNQTKLEGFVQDEAGRVIGVEVREGFYFPNERTGKISRIGARRGVIMA TGGFGRDIEYRMMQLPELNSDLDSTNHAGATSEALKQMMLIGANPIHLDQIQLGPWASPDEKGFGTASQFNTIATYPHGI VVDVRTGERFFNELADRKARADAIMTRRDEKGQPVYPIGFTNAAGASKAQTLDWGLKYKVISKAETLDELATIYGMPAKA LKAQVARWNEAVKTGVDKEFDRPMQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTQSEVLHLVSNKAIPGLYAAGEATGG IHGASRLGACAVAEGVVTGRNAGRNCAAASAVTLKQV
Sequences:
>Translated_517_residues MSKTQGINSGRRQLLKGGMVMAAGLGASIALPSSASCDLAPINFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVIDKMP VFGGNSTINGGAMAVAGSALQKQAGIEDSVDAMVADMLRAGRGMNDVEMLKLVCNGTAESCQWLIDYGVNWKPFVQHFGG HSVQRVLQTVESSGAGIIRPLIKAARDKGVIMKNQTKLEGFVQDEAGRVIGVEVREGFYFPNERTGKISRIGARRGVIMA TGGFGRDIEYRMMQLPELNSDLDSTNHAGATSEALKQMMLIGANPIHLDQIQLGPWASPDEKGFGTASQFNTIATYPHGI VVDVRTGERFFNELADRKARADAIMTRRDEKGQPVYPIGFTNAAGASKAQTLDWGLKYKVISKAETLDELATIYGMPAKA LKAQVARWNEAVKTGVDKEFDRPMQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTQSEVLHLVSNKAIPGLYAAGEATGG IHGASRLGACAVAEGVVTGRNAGRNCAAASAVTLKQV >Mature_516_residues SKTQGINSGRRQLLKGGMVMAAGLGASIALPSSASCDLAPINFDEIVDVLVVGSGFAGMSAALQAREAGVSVMVIDKMPV FGGNSTINGGAMAVAGSALQKQAGIEDSVDAMVADMLRAGRGMNDVEMLKLVCNGTAESCQWLIDYGVNWKPFVQHFGGH SVQRVLQTVESSGAGIIRPLIKAARDKGVIMKNQTKLEGFVQDEAGRVIGVEVREGFYFPNERTGKISRIGARRGVIMAT GGFGRDIEYRMMQLPELNSDLDSTNHAGATSEALKQMMLIGANPIHLDQIQLGPWASPDEKGFGTASQFNTIATYPHGIV VDVRTGERFFNELADRKARADAIMTRRDEKGQPVYPIGFTNAAGASKAQTLDWGLKYKVISKAETLDELATIYGMPAKAL KAQVARWNEAVKTGVDKEFDRPMQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTQSEVLHLVSNKAIPGLYAAGEATGGI HGASRLGACAVAEGVVTGRNAGRNCAAASAVTLKQV
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
Organism=Escherichia coli, GI1788928, Length=478, Percent_Identity=24.4769874476987, Blast_Score=82, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71986328, Length=490, Percent_Identity=27.7551020408163, Blast_Score=134, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6320788, Length=484, Percent_Identity=26.8595041322314, Blast_Score=138, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6322511, Length=481, Percent_Identity=25.1559251559252, Blast_Score=127, Evalue=3e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 55064; Mature: 54933
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTQGINSGRRQLLKGGMVMAAGLGASIALPSSASCDLAPINFDEIVDVLVVGSGFAGM CCCCCCCCHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHH SAALQAREAGVSVMVIDKMPVFGGNSTINGGAMAVAGSALQKQAGIEDSVDAMVADMLRA HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH GRGMNDVEMLKLVCNGTAESCQWLIDYGVNWKPFVQHFGGHSVQRVLQTVESSGAGIIRP CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHH LIKAARDKGVIMKNQTKLEGFVQDEAGRVIGVEVREGFYFPNERTGKISRIGARRGVIMA HHHHHCCCCCEEECCHHHHHHEECCCCCEEEEEEECCEECCCCCCCCHHHHHCCCCEEEE TGGFGRDIEYRMMQLPELNSDLDSTNHAGATSEALKQMMLIGANPIHLDQIQLGPWASPD ECCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC EKGFGTASQFNTIATYPHGIVVDVRTGERFFNELADRKARADAIMTRRDEKGQPVYPIGF CCCCCCHHHCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC TNAAGASKAQTLDWGLKYKVISKAETLDELATIYGMPAKALKAQVARWNEAVKTGVDKEF CCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH DRPMQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTQSEVLHLVSNKAIPGLYAAGEATGG CCHHHHHEEECCCCEEEEEECCEEEEHCCCEEECCHHHHHHHHHCCCCCCEEECCCCCCC IHGASRLGACAVAEGVVTGRNAGRNCAAASAVTLKQV CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEECC >Mature Secondary Structure SKTQGINSGRRQLLKGGMVMAAGLGASIALPSSASCDLAPINFDEIVDVLVVGSGFAGM CCCCCCCHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHH SAALQAREAGVSVMVIDKMPVFGGNSTINGGAMAVAGSALQKQAGIEDSVDAMVADMLRA HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH GRGMNDVEMLKLVCNGTAESCQWLIDYGVNWKPFVQHFGGHSVQRVLQTVESSGAGIIRP CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHH LIKAARDKGVIMKNQTKLEGFVQDEAGRVIGVEVREGFYFPNERTGKISRIGARRGVIMA HHHHHCCCCCEEECCHHHHHHEECCCCCEEEEEEECCEECCCCCCCCHHHHHCCCCEEEE TGGFGRDIEYRMMQLPELNSDLDSTNHAGATSEALKQMMLIGANPIHLDQIQLGPWASPD ECCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC EKGFGTASQFNTIATYPHGIVVDVRTGERFFNELADRKARADAIMTRRDEKGQPVYPIGF CCCCCCHHHCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC TNAAGASKAQTLDWGLKYKVISKAETLDELATIYGMPAKALKAQVARWNEAVKTGVDKEF CCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH DRPMQEAIVLDKGPWYAVRMWPKVHYCMGGVKVNTQSEVLHLVSNKAIPGLYAAGEATGG CCHHHHHEEECCCCEEEEEECCEEEEHCCCEEECCHHHHHHHHHCCCCCCEEECCCCCCC IHGASRLGACAVAEGVVTGRNAGRNCAAASAVTLKQV CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]