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The map label for this gene is atoS [H]

Identifier: 117919787

GI number: 117919787

Start: 1551942

End: 1553024

Strand: Direct

Name: atoS [H]

Synonym: Shewana3_1339

Alternate gene names: 117919787

Gene position: 1551942-1553024 (Clockwise)

Preceding gene: 117919786

Following gene: 117919788

Centisome position: 31.21

GC content: 48.75

Gene sequence:

>1083_bases
ATGTCTGCTCATCCACTAGCGCAAATTGAAACATTCAAGCACACTAGCAAACAATGGAACCAACTGCGTGAGGCCGCCAA
TATGTCCAATCGGATGGAGCATATTTTACAGGCTATGCCCTCTGGCGTGGTGATTTTGAACGGTGATGGTATTGTCACTG
ATGCAAACCCCGTTGCCGTCGAATTGCTGGAGCAGTCGTTATGCGGCGCCCGCTGGATTGATGTGATCCATACGGCGTTT
GCGCCACAGGACGATGATGGCCATGAAGTCTCATTACGCAATGGCCGCCGAGTCAAATTTGCGATTACCCCATTAACGCC
GGAACCTGGCCAATTAATTGTGCTGACGGATCTGACCGAAACTCGTCTACTGCAAAAGAATCTTTCCCATCTGCAGCGCC
TGTCAGCCCTCGGCAAAATGGTCGCGACGCTGGCGCATCAGGTGCGGACTCCACTGTCGGCTGCACTGCTCTATGCTGCT
AATCTGGCCAGTCCCAAATTATCGGAATCTGCTAAGGCAAAATTTCAGCAGAAATTAGTGGATAGACTCAATGAGCTTGA
ACGCCAAGTGAACGATATGCTGCTGATGGCCAAAGGACGTCAAGATGAGCTGGGCGAACTGATTAATCTTAATGATGTTA
TCGAGAATGTTGTTGCTAACTGTGAACCAATAGTTGCTAAGCATGGCGCTGAACTGGCGGTAACCAATATTTCTAATAGC
TTAATGCTGGCGAATGTGAATGCGCTCAGTTCAGCCGTCAATAACCTCGTGATGAACAGTCTTGAAGCCGGGGCTACGCA
GATCCAAATCGTTGCTAGTGATAGCAATGAACAGTTACATCTCAATGTTATCGATAATGGCAAAGGATTGGATGCCAAAA
TGCAGCAAAAAGTGTTGGAACCTTTCTTTACCACTAAAGCTCAGGGGACTGGTTTAGGCTTAGCCGTTGTACAGTCTGTG
GTGCGTAATCATGGCGGCCAACTGCAATTAAGCTGCATGCCCAATAAGGGTTGTACTGTGTCGCTAACCTTCCCGCAGGC
GAAATCGGCTGCTGTATTGCCGCTGGAGAAACCCTATGTCTGA

Upstream 100 bases:

>100_bases
ATGTTATTTATCTTATTGTTTTATCTATCTAAATTCATTTCTTAATTTGGCATAGAATCTGCAAGCACTCCGTCATAAGC
AATTTTTTGACGGAGTGACT

Downstream 100 bases:

>100_bases
AGCCAAATTACTCTTAGTCGAAGACGATGCCTCCCTGCGTGAGGCTTTGCTCGATACCTTAATGTTGGCGCAATACGACT
GTATTGATGTGGCATCAGGT

Product: PAS/PAC sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSAHPLAQIETFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVILNGDGIVTDANPVAVELLEQSLCGARWIDVIHTAF
APQDDDGHEVSLRNGRRVKFAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAA
NLASPKLSESAKAKFQQKLVDRLNELERQVNDMLLMAKGRQDELGELINLNDVIENVVANCEPIVAKHGAELAVTNISNS
LMLANVNALSSAVNNLVMNSLEAGATQIQIVASDSNEQLHLNVIDNGKGLDAKMQQKVLEPFFTTKAQGTGLGLAVVQSV
VRNHGGQLQLSCMPNKGCTVSLTFPQAKSAAVLPLEKPYV

Sequences:

>Translated_360_residues
MSAHPLAQIETFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVILNGDGIVTDANPVAVELLEQSLCGARWIDVIHTAF
APQDDDGHEVSLRNGRRVKFAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAA
NLASPKLSESAKAKFQQKLVDRLNELERQVNDMLLMAKGRQDELGELINLNDVIENVVANCEPIVAKHGAELAVTNISNS
LMLANVNALSSAVNNLVMNSLEAGATQIQIVASDSNEQLHLNVIDNGKGLDAKMQQKVLEPFFTTKAQGTGLGLAVVQSV
VRNHGGQLQLSCMPNKGCTVSLTFPQAKSAAVLPLEKPYV
>Mature_359_residues
SAHPLAQIETFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVILNGDGIVTDANPVAVELLEQSLCGARWIDVIHTAFA
PQDDDGHEVSLRNGRRVKFAITPLTPEPGQLIVLTDLTETRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAAN
LASPKLSESAKAKFQQKLVDRLNELERQVNDMLLMAKGRQDELGELINLNDVIENVVANCEPIVAKHGAELAVTNISNSL
MLANVNALSSAVNNLVMNSLEAGATQIQIVASDSNEQLHLNVIDNGKGLDAKMQQKVLEPFFTTKAQGTGLGLAVVQSVV
RNHGGQLQLSCMPNKGCTVSLTFPQAKSAAVLPLEKPYV

Specific function: Member of the two-component regulatory system AtoS/AtoC; may activate AtoC by phosphorylation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=245, Percent_Identity=28.9795918367347, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1790436, Length=239, Percent_Identity=33.0543933054393, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790346, Length=221, Percent_Identity=25.7918552036199, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1786600, Length=350, Percent_Identity=22.2857142857143, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788713, Length=265, Percent_Identity=23.7735849056604, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789808, Length=218, Percent_Identity=26.605504587156, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786912, Length=221, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790300, Length=253, Percent_Identity=25.6916996047431, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 38984; Mature: 38853

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHPLAQIETFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVILNGDGIVTDANPVAV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHH
ELLEQSLCGARWIDVIHTAFAPQDDDGHEVSLRNGRRVKFAITPLTPEPGQLIVLTDLTE
HHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCHH
TRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAANLASPKLSESAKAKFQQKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DRLNELERQVNDMLLMAKGRQDELGELINLNDVIENVVANCEPIVAKHGAELAVTNISNS
HHHHHHHHHHHHHEEEECCCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCEEEEEECCCC
LMLANVNALSSAVNNLVMNSLEAGATQIQIVASDSNEQLHLNVIDNGKGLDAKMQQKVLE
EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHH
PFFTTKAQGTGLGLAVVQSVVRNHGGQLQLSCMPNKGCTVSLTFPQAKSAAVLPLEKPYV
HHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEECCCCCCCC
>Mature Secondary Structure 
SAHPLAQIETFKHTSKQWNQLREAANMSNRMEHILQAMPSGVVILNGDGIVTDANPVAV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHH
ELLEQSLCGARWIDVIHTAFAPQDDDGHEVSLRNGRRVKFAITPLTPEPGQLIVLTDLTE
HHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEECCHH
TRLLQKNLSHLQRLSALGKMVATLAHQVRTPLSAALLYAANLASPKLSESAKAKFQQKLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DRLNELERQVNDMLLMAKGRQDELGELINLNDVIENVVANCEPIVAKHGAELAVTNISNS
HHHHHHHHHHHHHEEEECCCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCEEEEEECCCC
LMLANVNALSSAVNNLVMNSLEAGATQIQIVASDSNEQLHLNVIDNGKGLDAKMQQKVLE
EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHH
PFFTTKAQGTGLGLAVVQSVVRNHGGQLQLSCMPNKGCTVSLTFPQAKSAAVLPLEKPYV
HHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8346225; 9097040; 9278503 [H]