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The map label for this gene is ntrC [H]

Identifier: 117919786

GI number: 117919786

Start: 1550400

End: 1551833

Strand: Direct

Name: ntrC [H]

Synonym: Shewana3_1338

Alternate gene names: 117919786

Gene position: 1550400-1551833 (Clockwise)

Preceding gene: 117919785

Following gene: 117919787

Centisome position: 31.18

GC content: 46.44

Gene sequence:

>1434_bases
ATGATGCAAACAGATCAACGAATTTTACTTGTCGGAACCCCATCAGAGCGCTTAAGTCGCCTGTGTTGCATTTTTGAATT
TTTGGGTGAGCAGATTGAAATCGTCGCCATCGAAAAGTTAAGTCTTTGTCTGCAAGATACCCGGTTCCGCGCTTTAGTGG
TCACTGCTGATAACATGCCAGCTGATGCTCTCAAGTCACTTGCGAGTCAGTACCCATGGCAACCCATTTTGTTATTTGGC
AATGTAGATGATCTGCAAGTGTCGAATGTACTGGGTCACATTGAAGAGCCATTAAACTACCCACAACTAACCGAACTCCT
GCATTTTTGTCAGGTTTATGGGCAAGTCAAACGTCCACAAGTCCCAACCAGTGCAAATCAAACCAAACTGTTTCGTAGCT
TAGTGGGTCGTAGTGAAGGCATTGCCAATGTGCGTCACTTGATTAGCCAAGTCGCCACCTCTGATGCCACTGTATTAGTC
CTGGGTCAGTCGGGGACGGGTAAGGAAGTGGTTGCTCGGAACATTCATTATTTATCTGAGCGCCGAGATGGTCCTTTTAT
TCCGGTTAACTGTGGCGCGATTCCGCCTGAGTTATTGGAGAGTGAATTATTTGGCCATGAAAAGGGCTCTTTTACTGGGG
CAATTAGTTCTCGTAAGGGCCGTTTCGAACTTGCCGAAGGTGGCACGCTGTTCCTCGATGAAATTGGCGATATGCCTTTG
CAAATGCAGGTAAAATTGCTGCGCGTGTTGCAAGAACGTGTCTTTGAGCGTGTTGGGGGAACTAAAACGATTAATGCTGA
TGTACGTGTCGTAGCGGCAACCCATAGGGATCTTGAAACTATGATCAGCAGCAATGAGTTCCGTGAAGATCTTTATTACC
GCCTTAACGTCTTCCCGATCGAAATGCCAGCATTAAGTGAGCGTAAGGATGATGTTCCTTTACTGCTGCAAGAGTTAGTG
AGTCGTGTCTATAACGAGGGACGTGGCAAAGTTCGTTTTACTCAGCGTGCTATTGAATCGTTAAAAGAACATGCTTGGTC
AGGTAACGTTCGAGAATTATCTAACTTAGTTGAGCGCCTCACAATCTTGTATCCAGGTGGCTTAGTTGATGTTAACGATC
TGCCTGTTAAATATCGCCACATTGATGTGCCAGAATACTGTGTTGAAATGAGTGAAGAGCAACAGGAGCGTGATGCGCTC
GCTTCGATTTTCACCAGCGAAGAGCCAGTTGAAATTCCTGAAACGCGTTTCCCCAGTGAGTTACCACCTGAAGGCGTTAA
CCTCAAGGATCTGCTGGCAGAGCTTGAAATCGATATGATTCGCCAGGCGTTAGAGCTGCAGGATAACGTCGTTGCGCGTG
CTGCAGAAATGCTCGGTATTCGCCGTACTACCTTGGTTGAGAAAATGCGTAAGTACGGAATGACGAAAGAATAG

Upstream 100 bases:

>100_bases
TGGCACAGATTGTTACATTGAATTTGTTAAGCTTTTACAGCAACTAATCATAAAATAATTAATGCAAATTAATACATATT
AGAGCTTTACGGCCTACTGA

Downstream 100 bases:

>100_bases
TCATTTTGATGTTATTTATCTTATTGTTTTATCTATCTAAATTCATTTCTTAATTTGGCATAGAATCTGCAAGCACTCCG
TCATAAGCAATTTTTTGACG

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MMQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVAIEKLSLCLQDTRFRALVVTADNMPADALKSLASQYPWQPILLFG
NVDDLQVSNVLGHIEEPLNYPQLTELLHFCQVYGQVKRPQVPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLV
LGQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPIEMPALSERKDDVPLLLQELV
SRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDAL
ASIFTSEEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKE

Sequences:

>Translated_477_residues
MMQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVAIEKLSLCLQDTRFRALVVTADNMPADALKSLASQYPWQPILLFG
NVDDLQVSNVLGHIEEPLNYPQLTELLHFCQVYGQVKRPQVPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLV
LGQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPIEMPALSERKDDVPLLLQELV
SRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDAL
ASIFTSEEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKE
>Mature_477_residues
MMQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVAIEKLSLCLQDTRFRALVVTADNMPADALKSLASQYPWQPILLFG
NVDDLQVSNVLGHIEEPLNYPQLTELLHFCQVYGQVKRPQVPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLV
LGQSGTGKEVVARNIHYLSERRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPIEMPALSERKDDVPLLLQELV
SRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERLTILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDAL
ASIFTSEEPVEIPETRFPSELPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKE

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=355, Percent_Identity=41.9718309859155, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1789087, Length=350, Percent_Identity=43.4285714285714, Blast_Score=270, Evalue=1e-73,
Organism=Escherichia coli, GI1788550, Length=328, Percent_Identity=43.5975609756098, Blast_Score=261, Evalue=8e-71,
Organism=Escherichia coli, GI1790437, Length=416, Percent_Identity=37.9807692307692, Blast_Score=258, Evalue=6e-70,
Organism=Escherichia coli, GI1790299, Length=462, Percent_Identity=34.1991341991342, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI1788905, Length=323, Percent_Identity=42.4148606811146, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1789233, Length=396, Percent_Identity=38.6363636363636, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI87082152, Length=231, Percent_Identity=46.7532467532467, Blast_Score=211, Evalue=8e-56,
Organism=Escherichia coli, GI87081872, Length=342, Percent_Identity=35.672514619883, Blast_Score=205, Evalue=5e-54,
Organism=Escherichia coli, GI1786524, Length=351, Percent_Identity=36.4672364672365, Blast_Score=192, Evalue=5e-50,
Organism=Escherichia coli, GI1787583, Length=355, Percent_Identity=31.2676056338028, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI87081858, Length=329, Percent_Identity=30.3951367781155, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1789828, Length=235, Percent_Identity=36.5957446808511, Blast_Score=148, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 53847; Mature: 53847

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVAIEKLSLCLQDTRFRALVVTADNMP
CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEEEECCCC
ADALKSLASQYPWQPILLFGNVDDLQVSNVLGHIEEPLNYPQLTELLHFCQVYGQVKRPQ
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
VPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLVLGQSGTGKEVVARNIHYLSE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
RRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPL
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCEEEEHHHCCCCH
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPI
HHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEHHHHHHHHHCCHHHHHHHHEEEEEEEE
EMPALSERKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERL
ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDALASIFTSEEPVEIPETRFPSE
HHCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MMQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIVAIEKLSLCLQDTRFRALVVTADNMP
CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEEEEEEECCCC
ADALKSLASQYPWQPILLFGNVDDLQVSNVLGHIEEPLNYPQLTELLHFCQVYGQVKRPQ
HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
VPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLVLGQSGTGKEVVARNIHYLSE
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
RRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPL
CCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEECCCCCCCEEECCCCEEEEHHHCCCCH
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLETMISSNEFREDLYYRLNVFPI
HHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEHHHHHHHHHCCHHHHHHHHEEEEEEEE
EMPALSERKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERL
ECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHH
TILYPGGLVDVNDLPVKYRHIDVPEYCVEMSEEQQERDALASIFTSEEPVEIPETRFPSE
HHCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LPPEGVNLKDLLAELEIDMIRQALELQDNVVARAAEMLGIRRTTLVEKMRKYGMTKE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2881918; 11481430; 8478331 [H]