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The map label for this gene is yhbU [H]

Identifier: 117919514

GI number: 117919514

Start: 1250810

End: 1251811

Strand: Reverse

Name: yhbU [H]

Synonym: Shewana3_1065

Alternate gene names: 117919514

Gene position: 1251811-1250810 (Counterclockwise)

Preceding gene: 117919516

Following gene: 117919513

Centisome position: 25.18

GC content: 52.99

Gene sequence:

>1002_bases
ATGGAGTTGTTGTGTCCAGCAGGAAACCTGGCCTCGCTAAAGTCGGCGCTGCAGGCCGGAGCCGATGCTGTCTACCTTGG
GTTAAAGGATGATACCAATGCACGTTCATTCGCGGGCTTAAACTTCACCCCCGCAAAATTACAGGAAGCCGCCGAACTGA
CCCATCAGCGGGGCAAAAAAATCTTCCTCACCTTGAATACCTTTCCTAAGCCGAATGAGGAACACCGCTGGTATCAAGCC
ATCGACTTGGCGGCCAGCATTGGCGTCGATGCCTTAATCGTCGCCGATCTGTCACTGCTCGACTATGCCCACAGGCAATA
TCCGCATATTCCGCTGCATTTATCGGTACAGGCGAGCGCCACCAACTTGGGCGCACTGAGCTTTTATAAAGAAGCTTTTA
ATATCGCGCGGGTGGTGTTACCCAGAGTGCTGTCTATGAAACAAGTGCGCGATTTAGCTAAGGTCAGCCCAGTCGATTTA
GAGGTCTTTGCCTTTGGCAGCCTGTGCATCATGGCCGAAGGTCGCTTCCACTTATCCTCCTATGTTACCGGCCAATCGCC
AAACACTGGCGGCTCTTGCTCTCCGGCAAAACACGTGCGCTGGCAGGAACAGGGGCAAGACAGATTGACCCGCCTCAACG
AAGTCTTAATTGATAAGTCAGGGCTCGATGAACAAATGGGCTACCCAGTCGTCTGTAAGGGCCGTTATCTCACCCAAGAC
GATGATAAGCCGCAATATCTGCTCGAGTCTCCCACCAGCTTAAATACCCTTAGCCTGCTGCCTGAGCTTGCCAAGGCGGG
CATAGTGTCACTTAAGATTGAGGGGCGTCAGCGCAGCCCAGCCTATGTAGAGCAAGTGACTAAGGTGTGGCGTCAAGCGA
TTGATACTTATCTTAATCAGCCAGATAAATTCCAGACGCAGGCCCATTGGGAGCAAGCCCTCGCGAAAGTCTCCGAAGGG
CAAATTACCACCTTAGGCGCCTACGAGCGTGACTGGCAATAG

Upstream 100 bases:

>100_bases
GTTTACCGAGATTTTATGATCTTAAACCTGTTTTAAATCAATTCACCGCCAATCAATCTTCCCTACACTCTGCCCCTGTT
ATTTTATCGGGAGCACCATT

Downstream 100 bases:

>100_bases
CCCTAGCGATAACCACGAAGAAGAAACGATTATGAAAATTTCCCTCGGCCCACTGCTCTATTGCTGGGAAAAACAGCAGG
TCATCGACTTTTATCAGCAG

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MELLCPAGNLASLKSALQAGADAVYLGLKDDTNARSFAGLNFTPAKLQEAAELTHQRGKKIFLTLNTFPKPNEEHRWYQA
IDLAASIGVDALIVADLSLLDYAHRQYPHIPLHLSVQASATNLGALSFYKEAFNIARVVLPRVLSMKQVRDLAKVSPVDL
EVFAFGSLCIMAEGRFHLSSYVTGQSPNTGGSCSPAKHVRWQEQGQDRLTRLNEVLIDKSGLDEQMGYPVVCKGRYLTQD
DDKPQYLLESPTSLNTLSLLPELAKAGIVSLKIEGRQRSPAYVEQVTKVWRQAIDTYLNQPDKFQTQAHWEQALAKVSEG
QITTLGAYERDWQ

Sequences:

>Translated_333_residues
MELLCPAGNLASLKSALQAGADAVYLGLKDDTNARSFAGLNFTPAKLQEAAELTHQRGKKIFLTLNTFPKPNEEHRWYQA
IDLAASIGVDALIVADLSLLDYAHRQYPHIPLHLSVQASATNLGALSFYKEAFNIARVVLPRVLSMKQVRDLAKVSPVDL
EVFAFGSLCIMAEGRFHLSSYVTGQSPNTGGSCSPAKHVRWQEQGQDRLTRLNEVLIDKSGLDEQMGYPVVCKGRYLTQD
DDKPQYLLESPTSLNTLSLLPELAKAGIVSLKIEGRQRSPAYVEQVTKVWRQAIDTYLNQPDKFQTQAHWEQALAKVSEG
QITTLGAYERDWQ
>Mature_333_residues
MELLCPAGNLASLKSALQAGADAVYLGLKDDTNARSFAGLNFTPAKLQEAAELTHQRGKKIFLTLNTFPKPNEEHRWYQA
IDLAASIGVDALIVADLSLLDYAHRQYPHIPLHLSVQASATNLGALSFYKEAFNIARVVLPRVLSMKQVRDLAKVSPVDL
EVFAFGSLCIMAEGRFHLSSYVTGQSPNTGGSCSPAKHVRWQEQGQDRLTRLNEVLIDKSGLDEQMGYPVVCKGRYLTQD
DDKPQYLLESPTSLNTLSLLPELAKAGIVSLKIEGRQRSPAYVEQVTKVWRQAIDTYLNQPDKFQTQAHWEQALAKVSEG
QITTLGAYERDWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=333, Percent_Identity=62.4624624624625, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1788397, Length=321, Percent_Identity=30.2180685358255, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87081910, Length=303, Percent_Identity=30.6930693069307, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36956; Mature: 36956

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLASLKSALQAGADAVYLGLKDDTNARSFAGLNFTPAKLQEAAELTHQRGKK
CCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
IFLTLNTFPKPNEEHRWYQAIDLAASIGVDALIVADLSLLDYAHRQYPHIPLHLSVQASA
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
TNLGALSFYKEAFNIARVVLPRVLSMKQVRDLAKVSPVDLEVFAFGSLCIMAEGRFHLSS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCEEEHH
YVTGQSPNTGGSCSPAKHVRWQEQGQDRLTRLNEVLIDKSGLDEQMGYPVVCKGRYLTQD
EECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEECCCEECCC
DDKPQYLLESPTSLNTLSLLPELAKAGIVSLKIEGRQRSPAYVEQVTKVWRQAIDTYLNQ
CCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
PDKFQTQAHWEQALAKVSEGQITTLGAYERDWQ
CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
>Mature Secondary Structure
MELLCPAGNLASLKSALQAGADAVYLGLKDDTNARSFAGLNFTPAKLQEAAELTHQRGKK
CCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
IFLTLNTFPKPNEEHRWYQAIDLAASIGVDALIVADLSLLDYAHRQYPHIPLHLSVQASA
EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
TNLGALSFYKEAFNIARVVLPRVLSMKQVRDLAKVSPVDLEVFAFGSLCIMAEGRFHLSS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCEEEHH
YVTGQSPNTGGSCSPAKHVRWQEQGQDRLTRLNEVLIDKSGLDEQMGYPVVCKGRYLTQD
EECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEECCCEECCC
DDKPQYLLESPTSLNTLSLLPELAKAGIVSLKIEGRQRSPAYVEQVTKVWRQAIDTYLNQ
CCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
PDKFQTQAHWEQALAKVSEGQITTLGAYERDWQ
CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]