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The map label for this gene is ybiX [C]

Identifier: 117919169

GI number: 117919169

Start: 835586

End: 836260

Strand: Direct

Name: ybiX [C]

Synonym: Shewana3_0717

Alternate gene names: 117919169

Gene position: 835586-836260 (Clockwise)

Preceding gene: 117919168

Following gene: 117919170

Centisome position: 16.81

GC content: 50.37

Gene sequence:

>675_bases
ATGCTTATTGAAATTCCGAATGTTTTTTCTAAAGAAGAAGTCAATCAGCTAAGGGAACAGCTCGATGCCCGCACTTGGAT
TGATGGCAACCAGACTTCGGGCGTAATGGCGAGTACCCGCAAGCGTAATCAGCAGTTAGACAAAGATGACCCTGTCGCAC
TGCAAATCGGTGAGCTGATCATGGCGCGCTTATTGGCCCACCCTTTATTTGTCTCGGCGGCGCTGCCGCTACAGTTTTAT
CCTCCCTTGTTCAATCGTTATCAAGGCGGCGAAACCTTTGGCTATCATATCGATAATGCGATCCGCTCGACCAGCGAAGG
CATGGTGCGTACCGATCTGTCAGCCACTTTATTTTTAAGTGAGCCAGACACTTATCAAGGTGGTGAGCTGGTGATCCAAG
ATACCTATGGTCAGCAAAGCATTAAGCTCGCGGCGGGCTCATTGGTGTTGTATCCCTCGACGAGTCTGCATCAGGTTACT
CCTGTTACCTCGGGTGAACGTACCGCTGCTTTTATGTGGCTGCAGAGTATGGTGCGCGATGAGGGGCAGCGTCGTTTGCT
ATTTCAACTCGATCAATCGATTCAATCGTTGACGGCGCAGGCCGCGCCAGAACAAGAGTTGTTTAATCTGACGGGGGTTT
ACCATAACTTGCTCAGACGTTGGAGCGAGTTGTAG

Upstream 100 bases:

>100_bases
GTTAAGTGCGGATATGCACTTCTAAGCCGTATTAATCGAGATCTGAATGGCAGCCCTAGGGCTGCCTTTGATGTTTATGC
TATTCCAATAGGATTTTGAA

Downstream 100 bases:

>100_bases
TGATTCTAAGCTAGGCTTCTCTCCTCGCTTCATCTCCCCAAAGCGGGCGGTTTAGGGTATAATCCCGCCAGCTCTGAGGG
GCAACAAAACAGTAAACGTT

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MLIEIPNVFSKEEVNQLREQLDARTWIDGNQTSGVMASTRKRNQQLDKDDPVALQIGELIMARLLAHPLFVSAALPLQFY
PPLFNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFLSEPDTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTSLHQVT
PVTSGERTAAFMWLQSMVRDEGQRRLLFQLDQSIQSLTAQAAPEQELFNLTGVYHNLLRRWSEL

Sequences:

>Translated_224_residues
MLIEIPNVFSKEEVNQLREQLDARTWIDGNQTSGVMASTRKRNQQLDKDDPVALQIGELIMARLLAHPLFVSAALPLQFY
PPLFNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFLSEPDTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTSLHQVT
PVTSGERTAAFMWLQSMVRDEGQRRLLFQLDQSIQSLTAQAAPEQELFNLTGVYHNLLRRWSEL
>Mature_224_residues
MLIEIPNVFSKEEVNQLREQLDARTWIDGNQTSGVMASTRKRNQQLDKDDPVALQIGELIMARLLAHPLFVSAALPLQFY
PPLFNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFLSEPDTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTSLHQVT
PVTSGERTAAFMWLQSMVRDEGQRRLLFQLDQSIQSLTAQAAPEQELFNLTGVYHNLLRRWSEL

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain [H]

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=50.6666666666667, Blast_Score=243, Evalue=7e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005123
- InterPro:   IPR006620 [H]

Pfam domain/function: PF03171 2OG-FeII_Oxy [H]

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25248; Mature: 25248

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIEIPNVFSKEEVNQLREQLDARTWIDGNQTSGVMASTRKRNQQLDKDDPVALQIGELI
CEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
MARLLAHPLFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFLS
HHHHHHHHHHHHHCCCCHHCCHHHHHCCCCCEECCHHHHHHHHCCCCCEEECCEEEEEEC
EPDTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTSLHQVTPVTSGERTAAFMWLQSMVRD
CCCCCCCCEEEEEECCCCCEEEEEECCEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHC
EGQRRLLFQLDQSIQSLTAQAAPEQELFNLTGVYHNLLRRWSEL
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIEIPNVFSKEEVNQLREQLDARTWIDGNQTSGVMASTRKRNQQLDKDDPVALQIGELI
CEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
MARLLAHPLFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFLS
HHHHHHHHHHHHHCCCCHHCCHHHHHCCCCCEECCHHHHHHHHCCCCCEEECCEEEEEEC
EPDTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTSLHQVTPVTSGERTAAFMWLQSMVRD
CCCCCCCCEEEEEECCCCCEEEEEECCEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHC
EGQRRLLFQLDQSIQSLTAQAAPEQELFNLTGVYHNLLRRWSEL
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA