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The map label for this gene is bfrD [H]

Identifier: 117919168

GI number: 117919168

Start: 833315

End: 835510

Strand: Direct

Name: bfrD [H]

Synonym: Shewana3_0716

Alternate gene names: 117919168

Gene position: 833315-835510 (Clockwise)

Preceding gene: 117919166

Following gene: 117919169

Centisome position: 16.76

GC content: 48.13

Gene sequence:

>2196_bases
ATGAAATTTGCAAAACGCCGCAATGGCCGAGTTACGCTCGGTGCCCATGTTTTAGGTTCGTTAACGATTGGTATGGCGGT
TTCAGCCGCTCCGGCTATGGCGACGGAGCCACAGTCACAAGTCGTTGATAAGAAAGTTGAACATATTGAAGTGAACGGTG
AGTACTTAGGTTACAACACCCGTAAAGTGCAATCGGGTAAATTTACCGAAGATCTGCTCAATACCGCTAAAACCGTTACC
GTTATCAATCAAGATCTCATCAAGGATATGGGCGCCCAGAGTTTTACCGATGCACTGCGTGCAACCCCCGGTATCACACT
AGGGACAGGTGAGGGCGGCAACCCCTACGGTGATAGACCCTTTATCCGTGGTTACGACGCTCAATCTTCAACCTTTATCA
ATGGTATGCGTAATGTGGGCTCACAAAGTCGCGAAACCTTTAACATTGAACAAATCGAAGTCCTGAAAGGCCCAAGCTCT
GTGTATAACGGTCGCGGTGCCGTTGGCGGTAGCATCAATATTGTGACCAAAAAAGCCCAATCCGAAGACTTTATTAATGC
CGATGTTGCCGTCGGAACGGATTCGCTAAAACGCGCCAGTGTCGATGTCAACCATGTGATTGCCGATGAGGCTGCAGTTC
GTATCAACATGATGGCCCACGATGCCGATACCCCGGGGCGGGATGAAGTTACGGGTAATCGTTGGGGTGTTGCGCCTTCG
GTGACCTTTGGTTTAACCACGCCAACCAAAGTCACACTCGAATATTATCACTTTGAAAATCATGATATTCCTGATTATGG
TATTCCCTACGATCAGGCAACGGGTCAACCCGCAGATGTCGACCCTGATAACTTCTACGGTTTGTTGTCGCGGGATTTTC
GCGACACTATGGATGATACGGCGTCAGTGTTGATCAGCCATGATTTTAACAACGACATGCAGTTCACTTCGACCTCCATC
TATAGCCGTAACAGCAATTACTATATTGTGACCAACCCGGACGATACCACGGGCAACGTGGCTAATGGTTATGTTTGGCG
AAACACTAAGTCGCGCCATTCGGTCACAAAGACCTTAGCGACTCAATTGCAACTCTCGGGTGAAGCAAAACTCGCGGGAA
TGACTAACCGTTTTGCCGTCGGTACTGAACTCAGTAACGAACGTACCAGCAACTTGAGTTACACCGTCGATACGGGTAAT
GGCCGCAACGCGGGTTGTAATCAGGCGATGCTGGACAACTACAACTGTACGCTGCTGGATAATCCAAATCCGCACGATCC
TTGGGTTGGCACTATTACCCTCGGCACCGATGCGACTGTTACAGAAACCGATACTCGCTCGCTTTATGCCTTTAACACCA
TTGAGTTAACCGAAGCGTGGATGGTGAACGCCGGGATCCGTTGGGATGATTACAGCACCAGTGCTGAGAATTCGACTTCT
GAATTCAGTAACGATACCGACTTCTTTAACTATCAATTATCAGTACTTTATAAGCCTGCCGAAAACGGCAGTATTTATGC
CGCGTGGGGCACTTCTTCTAACCCTCCGGGAACCTCAAATGGTGATGGCGCGGATCGCCTCGGCAGTACCAACGCCGATT
TAGAGCCGGAAGATACGGAAAGCTATGAGTTAGGCACTAAGTGGGACTTCTTTGCTGGACGTTTATCTTTGAATGGTTCG
GTATTCCAAATCGAGAAAAACAACGCTCGGGTTGCGACCTCTGGCGATCGTAACTCGCCGCAGGAAAACGTTGGCGAGCA
AAAGGTGAAAGGTTTCGAACTCGGCTTCTCCGGTGACTTTACTGAGCATTGGCACGGTTTTGGTGGTTACACTTACTTGG
ATGCAACGTTGGAAAGCAATGGCTATAACCAAGCGCAAAATGGTAACCGCTTCCCCAATACCGCTAAAAATAGCTTAAGT
TTATTCACGACTTACGATGTGACTGAGGATTTTACTGTTGGTACGGGCGCGTACTACATGGGTAAAGTTTATGGTAATAC
GGCTAACACGTTATCGATTCCATCCTACTGGCGTTTTGATTTGACCTCATCCTATAAAATGAGTGAATTCTTGACCTTAC
GCCTGAACGTGCAGAATCTAACGGATGAACGTTATTACGATAAAGCGTACACCGCGCACTTTGCTAATATGGCCCCTGGT
CGCTTAGTGATGTTAAGTGCGGATATGCACTTCTAA

Upstream 100 bases:

>100_bases
AATAATTATTGATTGCAATTTATGTTTTGCATATATTAGCGGCGATTAACAGATGGGGGACATCTGTTACAGAGTTTACT
CCGCAACAGGAATGCTTTTG

Downstream 100 bases:

>100_bases
GCCGTATTAATCGAGATCTGAATGGCAGCCCTAGGGCTGCCTTTGATGTTTATGCTATTCCAATAGGATTTTGAAATGCT
TATTGAAATTCCGAATGTTT

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 731; Mature: 731

Protein sequence:

>731_residues
MKFAKRRNGRVTLGAHVLGSLTIGMAVSAAPAMATEPQSQVVDKKVEHIEVNGEYLGYNTRKVQSGKFTEDLLNTAKTVT
VINQDLIKDMGAQSFTDALRATPGITLGTGEGGNPYGDRPFIRGYDAQSSTFINGMRNVGSQSRETFNIEQIEVLKGPSS
VYNGRGAVGGSINIVTKKAQSEDFINADVAVGTDSLKRASVDVNHVIADEAAVRINMMAHDADTPGRDEVTGNRWGVAPS
VTFGLTTPTKVTLEYYHFENHDIPDYGIPYDQATGQPADVDPDNFYGLLSRDFRDTMDDTASVLISHDFNNDMQFTSTSI
YSRNSNYYIVTNPDDTTGNVANGYVWRNTKSRHSVTKTLATQLQLSGEAKLAGMTNRFAVGTELSNERTSNLSYTVDTGN
GRNAGCNQAMLDNYNCTLLDNPNPHDPWVGTITLGTDATVTETDTRSLYAFNTIELTEAWMVNAGIRWDDYSTSAENSTS
EFSNDTDFFNYQLSVLYKPAENGSIYAAWGTSSNPPGTSNGDGADRLGSTNADLEPEDTESYELGTKWDFFAGRLSLNGS
VFQIEKNNARVATSGDRNSPQENVGEQKVKGFELGFSGDFTEHWHGFGGYTYLDATLESNGYNQAQNGNRFPNTAKNSLS
LFTTYDVTEDFTVGTGAYYMGKVYGNTANTLSIPSYWRFDLTSSYKMSEFLTLRLNVQNLTDERYYDKAYTAHFANMAPG
RLVMLSADMHF

Sequences:

>Translated_731_residues
MKFAKRRNGRVTLGAHVLGSLTIGMAVSAAPAMATEPQSQVVDKKVEHIEVNGEYLGYNTRKVQSGKFTEDLLNTAKTVT
VINQDLIKDMGAQSFTDALRATPGITLGTGEGGNPYGDRPFIRGYDAQSSTFINGMRNVGSQSRETFNIEQIEVLKGPSS
VYNGRGAVGGSINIVTKKAQSEDFINADVAVGTDSLKRASVDVNHVIADEAAVRINMMAHDADTPGRDEVTGNRWGVAPS
VTFGLTTPTKVTLEYYHFENHDIPDYGIPYDQATGQPADVDPDNFYGLLSRDFRDTMDDTASVLISHDFNNDMQFTSTSI
YSRNSNYYIVTNPDDTTGNVANGYVWRNTKSRHSVTKTLATQLQLSGEAKLAGMTNRFAVGTELSNERTSNLSYTVDTGN
GRNAGCNQAMLDNYNCTLLDNPNPHDPWVGTITLGTDATVTETDTRSLYAFNTIELTEAWMVNAGIRWDDYSTSAENSTS
EFSNDTDFFNYQLSVLYKPAENGSIYAAWGTSSNPPGTSNGDGADRLGSTNADLEPEDTESYELGTKWDFFAGRLSLNGS
VFQIEKNNARVATSGDRNSPQENVGEQKVKGFELGFSGDFTEHWHGFGGYTYLDATLESNGYNQAQNGNRFPNTAKNSLS
LFTTYDVTEDFTVGTGAYYMGKVYGNTANTLSIPSYWRFDLTSSYKMSEFLTLRLNVQNLTDERYYDKAYTAHFANMAPG
RLVMLSADMHF
>Mature_731_residues
MKFAKRRNGRVTLGAHVLGSLTIGMAVSAAPAMATEPQSQVVDKKVEHIEVNGEYLGYNTRKVQSGKFTEDLLNTAKTVT
VINQDLIKDMGAQSFTDALRATPGITLGTGEGGNPYGDRPFIRGYDAQSSTFINGMRNVGSQSRETFNIEQIEVLKGPSS
VYNGRGAVGGSINIVTKKAQSEDFINADVAVGTDSLKRASVDVNHVIADEAAVRINMMAHDADTPGRDEVTGNRWGVAPS
VTFGLTTPTKVTLEYYHFENHDIPDYGIPYDQATGQPADVDPDNFYGLLSRDFRDTMDDTASVLISHDFNNDMQFTSTSI
YSRNSNYYIVTNPDDTTGNVANGYVWRNTKSRHSVTKTLATQLQLSGEAKLAGMTNRFAVGTELSNERTSNLSYTVDTGN
GRNAGCNQAMLDNYNCTLLDNPNPHDPWVGTITLGTDATVTETDTRSLYAFNTIELTEAWMVNAGIRWDDYSTSAENSTS
EFSNDTDFFNYQLSVLYKPAENGSIYAAWGTSSNPPGTSNGDGADRLGSTNADLEPEDTESYELGTKWDFFAGRLSLNGS
VFQIEKNNARVATSGDRNSPQENVGEQKVKGFELGFSGDFTEHWHGFGGYTYLDATLESNGYNQAQNGNRFPNTAKNSLS
LFTTYDVTEDFTVGTGAYYMGKVYGNTANTLSIPSYWRFDLTSSYKMSEFLTLRLNVQNLTDERYYDKAYTAHFANMAPG
RLVMLSADMHF

Specific function: Probably involved in iron transport [H]

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=775, Percent_Identity=31.6129032258064, Blast_Score=332, Evalue=6e-92,
Organism=Escherichia coli, GI1787723, Length=268, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1787344, Length=278, Percent_Identity=26.978417266187, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1786344, Length=278, Percent_Identity=24.8201438848921, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 80239; Mature: 80239

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFAKRRNGRVTLGAHVLGSLTIGMAVSAAPAMATEPQSQVVDKKVEHIEVNGEYLGYNT
CCCCCCCCCCEEEEHHHHHHHHHHHHEECCCCCCCCCHHHHHHCCEEEEEECCEEECCCC
RKVQSGKFTEDLLNTAKTVTVINQDLIKDMGAQSFTDALRATPGITLGTGEGGNPYGDRP
EEECCCCCHHHHHHHHHEEEEHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC
FIRGYDAQSSTFINGMRNVGSQSRETFNIEQIEVLKGPSSVYNGRGAVGGSINIVTKKAQ
EEECCCCCCHHHHHHHHHCCCCCCCEECCEEEEEECCCHHHCCCCCCCCCEEEEEEECCC
SEDFINADVAVGTDSLKRASVDVNHVIADEAAVRINMMAHDADTPGRDEVTGNRWGVAPS
CCCCCCCEEEECCCHHHHCCCCHHEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
VTFGLTTPTKVTLEYYHFENHDIPDYGIPYDQATGQPADVDPDNFYGLLSRDFRDTMDDT
EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
ASVLISHDFNNDMQFTSTSIYSRNSNYYIVTNPDDTTGNVANGYVWRNTKSRHSVTKTLA
EEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHH
TQLQLSGEAKLAGMTNRFAVGTELSNERTSNLSYTVDTGNGRNAGCNQAMLDNYNCTLLD
HHHEECCCEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCEEEEC
NPNPHDPWVGTITLGTDATVTETDTRSLYAFNTIELTEAWMVNAGIRWDDYSTSAENSTS
CCCCCCCEEEEEEECCCCEEEECCCCEEEEEEEEEEEEEEEEECCCEECCCCCCCCCCCH
EFSNDTDFFNYQLSVLYKPAENGSIYAAWGTSSNPPGTSNGDGADRLGSTNADLEPEDTE
HCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
SYELGTKWDFFAGRLSLNGSVFQIEKNNARVATSGDRNSPQENVGEQKVKGFELGFSGDF
CEECCCCEEEEEEEEEECCCEEEEECCCCEEEECCCCCCCHHHHCHHHCCEEEECCCCCC
TEHWHGFGGYTYLDATLESNGYNQAQNGNRFPNTAKNSLSLFTTYDVTEDFTVGTGAYYM
HHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCEEE
GKVYGNTANTLSIPSYWRFDLTSSYKMSEFLTLRLNVQNLTDERYYDKAYTAHFANMAPG
EEEECCCCCEEECCCEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCC
RLVMLSADMHF
EEEEEECCCCC
>Mature Secondary Structure
MKFAKRRNGRVTLGAHVLGSLTIGMAVSAAPAMATEPQSQVVDKKVEHIEVNGEYLGYNT
CCCCCCCCCCEEEEHHHHHHHHHHHHEECCCCCCCCCHHHHHHCCEEEEEECCEEECCCC
RKVQSGKFTEDLLNTAKTVTVINQDLIKDMGAQSFTDALRATPGITLGTGEGGNPYGDRP
EEECCCCCHHHHHHHHHEEEEHHHHHHHHCCCHHHHHHHHCCCCEEEECCCCCCCCCCCC
FIRGYDAQSSTFINGMRNVGSQSRETFNIEQIEVLKGPSSVYNGRGAVGGSINIVTKKAQ
EEECCCCCCHHHHHHHHHCCCCCCCEECCEEEEEECCCHHHCCCCCCCCCEEEEEEECCC
SEDFINADVAVGTDSLKRASVDVNHVIADEAAVRINMMAHDADTPGRDEVTGNRWGVAPS
CCCCCCCEEEECCCHHHHCCCCHHEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCC
VTFGLTTPTKVTLEYYHFENHDIPDYGIPYDQATGQPADVDPDNFYGLLSRDFRDTMDDT
EEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
ASVLISHDFNNDMQFTSTSIYSRNSNYYIVTNPDDTTGNVANGYVWRNTKSRHSVTKTLA
EEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHH
TQLQLSGEAKLAGMTNRFAVGTELSNERTSNLSYTVDTGNGRNAGCNQAMLDNYNCTLLD
HHHEECCCEEEECCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHHCCCCEEEEC
NPNPHDPWVGTITLGTDATVTETDTRSLYAFNTIELTEAWMVNAGIRWDDYSTSAENSTS
CCCCCCCEEEEEEECCCCEEEECCCCEEEEEEEEEEEEEEEEECCCEECCCCCCCCCCCH
EFSNDTDFFNYQLSVLYKPAENGSIYAAWGTSSNPPGTSNGDGADRLGSTNADLEPEDTE
HCCCCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
SYELGTKWDFFAGRLSLNGSVFQIEKNNARVATSGDRNSPQENVGEQKVKGFELGFSGDF
CEECCCCEEEEEEEEEECCCEEEEECCCCEEEECCCCCCCHHHHCHHHCCEEEECCCCCC
TEHWHGFGGYTYLDATLESNGYNQAQNGNRFPNTAKNSLSLFTTYDVTEDFTVGTGAYYM
HHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCEEE
GKVYGNTANTLSIPSYWRFDLTSSYKMSEFLTLRLNVQNLTDERYYDKAYTAHFANMAPG
EEEECCCCCEEECCCEEEEECCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCC
RLVMLSADMHF
EEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]