Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
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Accession | NC_008577 |
Length | 4,972,204 |
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The map label for this gene is rlmF
Identifier: 117918585
GI number: 117918585
Start: 143323
End: 144417
Strand: Direct
Name: rlmF
Synonym: Shewana3_0127
Alternate gene names: 117918585
Gene position: 143323-144417 (Clockwise)
Preceding gene: 117918584
Following gene: 117918590
Centisome position: 2.88
GC content: 50.78
Gene sequence:
>1095_bases ATGCCTAAACCCGCCATTAAAACTGCCGCTAAACTCGCGATGTCATCCGCAGGTAAAAGGGGTAAGCCAAGCACGCCCAA ATCGCTAGCTAAACCTCAAACAACCAAACCTAAAACGGCGAGTAAGCTCAAAGCGAAGCACGGCGAGCAGAAGCGCTTAC ATCCACGTAATTTGCACATTAATGGTTATGACTTTCCGGCCCTGATGGCGAGTTTTCCTAAGCTAAAAGCCTTTGTCCGG CCCACGCCCTACGGCGCCTTATCTATCGATTTTGCCGATCCCTTTGCGGTAAAAAACCTGAATGCGGCGCTCTTGAAACA TCATTATGGTCTGGCATTTTGGGATATCCCCAAGGGCGCGTTGTGCCCGCCAATTCCTGGGCGGGTCGACTATCTGCATT ACTTGGCCGATCTCTTATTTGAGGGTGCCAAAGTTAAGCGCGCTGCGGCGATTCATGCCTTAGATATTGGCACAGGGGCG AATGGCGTTTATGCCATCTTAGGGCATCAAGTGTATGACTGGCAGTTTGTCGCCTCGGATATTAATCCTCAGTCGCTCAT CAATGTGCAGCGGATTATCGACAATAACCCGAGTTTGCAGGGGCACTTATCCTTAAGGCGGCAGCAGGATGACAAGGCGG TCTTTAAGGGGATCATTCAGGCCTCTGACCGCTTCGAGCTAACTCTGTGTAATCCTCCCTTTCATGGCTCGTTAAAAGAA GCGAGTGAAGGCTCGCTGCGCAAGGTGCGTAATCTGCAACTCAATCGTGGTGAGCAGCCTAAAGCGACCAGCGCGACCTT AAACTTTGGTGGTCAGGCGGCGGAGTTATGGTGCCAAGGGGGAGAAAAGCAATTTTTAGCCACTATGATCCGCGAGAGCC AAGCGTTTGCCGAGCAATGTTTGTGGTTTACCAGCTTAGTGTCGAAGCAGGAGAATCTAAAGCCCTGTTATCAGGCTTTG GAAAAGTTGGGTGTCGATACAGTAAAAACCATTGAAATGCAGCAGGGCAATAAGGTCACTCGGGTGCTCGCATGGAGTTT CCATTCGCAGGCTAAACGTTTGCAGTGGCGTAATCAGGTCATCAGCGGGGCATAA
Upstream 100 bases:
>100_bases AGTGGTCAACCTACTGTTTACCTCCTATCTTTACGATTAATTCCGCCAATATGTTTGAGGGCTGATCCTTGGATTAGCCC GCCCTTGTTGATAAGTCATT
Downstream 100 bases:
>100_bases AAACAGGCGCCGAGTGCGCCTGTTTTTTTTACTAGCCTCAATTACTGGGCGTTTTCCTGTGGGTGGTCGCGACGAAATAG CGCCCACTCATCAATTTTTT
Product: putative SAM-dependent methyltransferase
Products: NA
Alternate protein names: 23S rRNA mA1618 methyltransferase; rRNA adenine N-6-methyltransferase
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MPKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHINGYDFPALMASFPKLKAFVR PTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGALCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGA NGVYAILGHQVYDWQFVASDINPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQCLWFTSLVSKQENLKPCYQAL EKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQVISGA
Sequences:
>Translated_364_residues MPKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHINGYDFPALMASFPKLKAFVR PTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGALCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGA NGVYAILGHQVYDWQFVASDINPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQCLWFTSLVSKQENLKPCYQAL EKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQVISGA >Mature_363_residues PKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHINGYDFPALMASFPKLKAFVRP TPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGALCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGAN GVYAILGHQVYDWQFVASDINPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKEA SEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQCLWFTSLVSKQENLKPCYQALE KLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQVISGA
Specific function: Specifically methylates the adenine in position 1618 of 23S rRNA
COG id: COG3129
COG function: function code R; Predicted SAM-dependent methyltransferase
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. METT10D/rlmF family
Homologues:
Organism=Homo sapiens, GI122114654, Length=303, Percent_Identity=27.7227722772277, Blast_Score=135, Evalue=9e-32, Organism=Escherichia coli, GI87081786, Length=307, Percent_Identity=49.185667752443, Blast_Score=305, Evalue=4e-84, Organism=Caenorhabditis elegans, GI32564931, Length=306, Percent_Identity=26.4705882352941, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI32564933, Length=306, Percent_Identity=24.1830065359477, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI281363415, Length=302, Percent_Identity=27.8145695364238, Blast_Score=119, Evalue=5e-27, Organism=Drosophila melanogaster, GI19922302, Length=302, Percent_Identity=27.8145695364238, Blast_Score=119, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): RLMF_SHESA (A0KRF2)
Other databases:
- EMBL: CP000469 - RefSeq: YP_867777.1 - ProteinModelPortal: A0KRF2 - SMR: A0KRF2 - STRING: A0KRF2 - GeneID: 4477276 - GenomeReviews: CP000469_GR - KEGG: shn:Shewana3_0127 - NMPDR: fig|94122.5.peg.310 - eggNOG: COG3129 - HOGENOM: HBG747880 - OMA: AELWCEG - PhylomeDB: A0KRF2 - ProtClustDB: PRK11727 - BioCyc: SSP94122:SHEWANA3_0127-MONOMER - GO: GO:0005737 - HAMAP: MF_01848 - InterPro: IPR016909 - InterPro: IPR010286 - PANTHER: PTHR13393 - PIRSF: PIRSF029038
Pfam domain/function: PF05971 Methyltransf_10
EC number: =2.1.1.181
Molecular weight: Translated: 40256; Mature: 40125
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHI CCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE NGYDFPALMASFPKLKAFVRPTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGA CCCCHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHCCHHHHHHHHCCEEEEECCCCC LCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGANGVYAILGHQVYDWQFVASD CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHEEEEECCCCCCCEEEEECCEEEEEEEEECC INPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE CCHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQC CCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LWFTSLVSKQENLKPCYQALEKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQV HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHH ISGA HCCC >Mature Secondary Structure PKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHI CCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE NGYDFPALMASFPKLKAFVRPTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGA CCCCHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHCCHHHHHHHHCCEEEEECCCCC LCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGANGVYAILGHQVYDWQFVASD CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHEEEEECCCCCCCEEEEECCEEEEEEEEECC INPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE CCHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQC CCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LWFTSLVSKQENLKPCYQALEKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQV HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHH ISGA HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA