The gene/protein map for NC_008577 is currently unavailable.
Definition Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence.
Accession NC_008577
Length 4,972,204

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The map label for this gene is rlmF

Identifier: 117918585

GI number: 117918585

Start: 143323

End: 144417

Strand: Direct

Name: rlmF

Synonym: Shewana3_0127

Alternate gene names: 117918585

Gene position: 143323-144417 (Clockwise)

Preceding gene: 117918584

Following gene: 117918590

Centisome position: 2.88

GC content: 50.78

Gene sequence:

>1095_bases
ATGCCTAAACCCGCCATTAAAACTGCCGCTAAACTCGCGATGTCATCCGCAGGTAAAAGGGGTAAGCCAAGCACGCCCAA
ATCGCTAGCTAAACCTCAAACAACCAAACCTAAAACGGCGAGTAAGCTCAAAGCGAAGCACGGCGAGCAGAAGCGCTTAC
ATCCACGTAATTTGCACATTAATGGTTATGACTTTCCGGCCCTGATGGCGAGTTTTCCTAAGCTAAAAGCCTTTGTCCGG
CCCACGCCCTACGGCGCCTTATCTATCGATTTTGCCGATCCCTTTGCGGTAAAAAACCTGAATGCGGCGCTCTTGAAACA
TCATTATGGTCTGGCATTTTGGGATATCCCCAAGGGCGCGTTGTGCCCGCCAATTCCTGGGCGGGTCGACTATCTGCATT
ACTTGGCCGATCTCTTATTTGAGGGTGCCAAAGTTAAGCGCGCTGCGGCGATTCATGCCTTAGATATTGGCACAGGGGCG
AATGGCGTTTATGCCATCTTAGGGCATCAAGTGTATGACTGGCAGTTTGTCGCCTCGGATATTAATCCTCAGTCGCTCAT
CAATGTGCAGCGGATTATCGACAATAACCCGAGTTTGCAGGGGCACTTATCCTTAAGGCGGCAGCAGGATGACAAGGCGG
TCTTTAAGGGGATCATTCAGGCCTCTGACCGCTTCGAGCTAACTCTGTGTAATCCTCCCTTTCATGGCTCGTTAAAAGAA
GCGAGTGAAGGCTCGCTGCGCAAGGTGCGTAATCTGCAACTCAATCGTGGTGAGCAGCCTAAAGCGACCAGCGCGACCTT
AAACTTTGGTGGTCAGGCGGCGGAGTTATGGTGCCAAGGGGGAGAAAAGCAATTTTTAGCCACTATGATCCGCGAGAGCC
AAGCGTTTGCCGAGCAATGTTTGTGGTTTACCAGCTTAGTGTCGAAGCAGGAGAATCTAAAGCCCTGTTATCAGGCTTTG
GAAAAGTTGGGTGTCGATACAGTAAAAACCATTGAAATGCAGCAGGGCAATAAGGTCACTCGGGTGCTCGCATGGAGTTT
CCATTCGCAGGCTAAACGTTTGCAGTGGCGTAATCAGGTCATCAGCGGGGCATAA

Upstream 100 bases:

>100_bases
AGTGGTCAACCTACTGTTTACCTCCTATCTTTACGATTAATTCCGCCAATATGTTTGAGGGCTGATCCTTGGATTAGCCC
GCCCTTGTTGATAAGTCATT

Downstream 100 bases:

>100_bases
AAACAGGCGCCGAGTGCGCCTGTTTTTTTTACTAGCCTCAATTACTGGGCGTTTTCCTGTGGGTGGTCGCGACGAAATAG
CGCCCACTCATCAATTTTTT

Product: putative SAM-dependent methyltransferase

Products: NA

Alternate protein names: 23S rRNA mA1618 methyltransferase; rRNA adenine N-6-methyltransferase

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MPKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHINGYDFPALMASFPKLKAFVR
PTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGALCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGA
NGVYAILGHQVYDWQFVASDINPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE
ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQCLWFTSLVSKQENLKPCYQAL
EKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQVISGA

Sequences:

>Translated_364_residues
MPKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHINGYDFPALMASFPKLKAFVR
PTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGALCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGA
NGVYAILGHQVYDWQFVASDINPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE
ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQCLWFTSLVSKQENLKPCYQAL
EKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQVISGA
>Mature_363_residues
PKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHINGYDFPALMASFPKLKAFVRP
TPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGALCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGAN
GVYAILGHQVYDWQFVASDINPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKEA
SEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQCLWFTSLVSKQENLKPCYQALE
KLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQVISGA

Specific function: Specifically methylates the adenine in position 1618 of 23S rRNA

COG id: COG3129

COG function: function code R; Predicted SAM-dependent methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. METT10D/rlmF family

Homologues:

Organism=Homo sapiens, GI122114654, Length=303, Percent_Identity=27.7227722772277, Blast_Score=135, Evalue=9e-32,
Organism=Escherichia coli, GI87081786, Length=307, Percent_Identity=49.185667752443, Blast_Score=305, Evalue=4e-84,
Organism=Caenorhabditis elegans, GI32564931, Length=306, Percent_Identity=26.4705882352941, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI32564933, Length=306, Percent_Identity=24.1830065359477, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281363415, Length=302, Percent_Identity=27.8145695364238, Blast_Score=119, Evalue=5e-27,
Organism=Drosophila melanogaster, GI19922302, Length=302, Percent_Identity=27.8145695364238, Blast_Score=119, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLMF_SHESA (A0KRF2)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_867777.1
- ProteinModelPortal:   A0KRF2
- SMR:   A0KRF2
- STRING:   A0KRF2
- GeneID:   4477276
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_0127
- NMPDR:   fig|94122.5.peg.310
- eggNOG:   COG3129
- HOGENOM:   HBG747880
- OMA:   AELWCEG
- PhylomeDB:   A0KRF2
- ProtClustDB:   PRK11727
- BioCyc:   SSP94122:SHEWANA3_0127-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01848
- InterPro:   IPR016909
- InterPro:   IPR010286
- PANTHER:   PTHR13393
- PIRSF:   PIRSF029038

Pfam domain/function: PF05971 Methyltransf_10

EC number: =2.1.1.181

Molecular weight: Translated: 40256; Mature: 40125

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHI
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE
NGYDFPALMASFPKLKAFVRPTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGA
CCCCHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHCCHHHHHHHHCCEEEEECCCCC
LCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGANGVYAILGHQVYDWQFVASD
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHEEEEECCCCCCCEEEEECCEEEEEEEEECC
INPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE
CCHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQC
CCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LWFTSLVSKQENLKPCYQALEKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQV
HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHH
ISGA
HCCC
>Mature Secondary Structure 
PKPAIKTAAKLAMSSAGKRGKPSTPKSLAKPQTTKPKTASKLKAKHGEQKRLHPRNLHI
CCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEE
NGYDFPALMASFPKLKAFVRPTPYGALSIDFADPFAVKNLNAALLKHHYGLAFWDIPKGA
CCCCHHHHHHHCHHHHHHCCCCCCCEEEEECCCCHHHHCCHHHHHHHHCCEEEEECCCCC
LCPPIPGRVDYLHYLADLLFEGAKVKRAAAIHALDIGTGANGVYAILGHQVYDWQFVASD
CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHEEEEECCCCCCCEEEEECCEEEEEEEEECC
INPQSLINVQRIIDNNPSLQGHLSLRRQQDDKAVFKGIIQASDRFELTLCNPPFHGSLKE
CCHHHHHHHHHHHCCCCCCEEHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
ASEGSLRKVRNLQLNRGEQPKATSATLNFGGQAAELWCQGGEKQFLATMIRESQAFAEQC
CCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LWFTSLVSKQENLKPCYQALEKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKRLQWRNQV
HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHH
ISGA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA