Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621807

Identifier: 117621807

GI number: 117621807

Start: 7986

End: 8990

Strand: Direct

Name: 117621807

Synonym: BAPKO_4507

Alternate gene names: NA

Gene position: 7986-8990 (Clockwise)

Preceding gene: 117621805

Following gene: 117621808

Centisome position: 27.99

GC content: 23.78

Gene sequence:

>1005_bases
ATGTCTAATCCCAATTTATATAAATTTCAAAGTGCATCTATAGGAGAAATCGTGTATACTGACCCAAGGTCAATTATTAA
TACTTACTTTGTAAAAAACAAAAAAATATTCATTATCAACCCCATAGCTTTTAAATTTGAACTTAATTTTGAAAAAACTA
TTCAAACAAACTTAAAAGAGAATATCGACCTTAAAACATTTAAAGGTGGAATTATTAATTTAAAATTAAGGTCAAATGAA
TTTTCTAAATTACCAACAGACATTCTAAAGGGGAAACTTGAATTTTATATTAACTATGTAAGTGAAGAAAAACTTAAAAT
AGTTTATGACATGATGATAGTAAAAGTTTATACGATTGATTTAAAAGCTAGCAACAAAGATAAAATTTGCCTAATCGGAC
TTAAAATACTTGGTTCTATTTATAGAAAAGAAAATGTAGAAAATGCGTTTATTCCTATTATAAAAAATAATAATACTTAC
CTTTTTGAAGGTAAAGCAAACAACCAAAAAGTTAATTTGTTATTAAAGGGCATTAATAAAACTATTCAACTTCCTTTTTT
GACAAAAATAAGCTATTCAAATATCAAAATTATCAATAAAGCTGATATAAAAACTAGTGAAAATTCAAATGCAAACATTA
AAGCAACAAATAGAATACTACTAAATCTAAGCACAAAAATCTATGAAGAACTAATTCTAACAAATTCAAATCAAATAAAA
ACTATCAACAATAAACAAAAAATTCTCAAAACATTAAGATCTTTTATTGAAAACGAGAACGGATTAGGAGGCAAAATAAG
GTTAATCTTTTTAGAAAAAACAAATTTTCTGACTAAAAATTTAAACTCAAATAACTTAGACTTTATTTTAAATGATATCA
ATATTATACAAGAAAATAGCTATATCAGAATTGACATCACTTTACTAGAAGATAAAATTGAAAAAAAATACTTAACCCAA
TCCCCAAACATAAACCCATTTCTTAAAAATATCACCTTGGTGTAA

Upstream 100 bases:

>100_bases
ATTTAAATAAAAACATTCTAATTTTACAGCTTGAATTAAAATTAAAAAACTATTATTATTAGGTGTTGTTCTAACAAAAA
CCAATTAAAAAGATTAGATT

Downstream 100 bases:

>100_bases
ATTTTTTCAATCAGATATATTACATAATTTATCTCAGATATATAATCTAGTAATTATTAATAAAAACTCTACTAAAAGTA
TTCAACATATAACCTACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKENIDLKTFKGGIINLKLRSNE
FSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTIDLKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTY
LFEGKANNQKVNLLLKGINKTIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK
TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENSYIRIDITLLEDKIEKKYLTQ
SPNINPFLKNITLV

Sequences:

>Translated_334_residues
MSNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKENIDLKTFKGGIINLKLRSNE
FSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTIDLKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTY
LFEGKANNQKVNLLLKGINKTIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK
TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENSYIRIDITLLEDKIEKKYLTQ
SPNINPFLKNITLV
>Mature_333_residues
SNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKENIDLKTFKGGIINLKLRSNEF
SKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTIDLKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTYL
FEGKANNQKVNLLLKGINKTIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIKT
INNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENSYIRIDITLLEDKIEKKYLTQS
PNINPFLKNITLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38579; Mature: 38448

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKE
CCCCCEEEECCCCCCEEEEECCHHHHHHHEEECCEEEEECCEEEEEEECHHHHHHHHHHH
NIDLKTFKGGIINLKLRSNEFSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTID
CCCEEEECCCEEEEEECCCCCCCCCHHHHCCEEEEEEEECCCCHHHHHEEEEEEEEEEEE
LKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTYLFEGKANNQKVNLLLKGINK
EECCCCCCEEEEEHHHHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCCEEEEEEECCCC
TIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK
EEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEE
TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENS
EECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEECCCCCCCCEEEEECEEEEECCC
YIRIDITLLEDKIEKKYLTQSPNINPFLKNITLV
EEEEEEEEECHHHHHHHHCCCCCCCHHHHCEECC
>Mature Secondary Structure 
SNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKE
CCCCEEEECCCCCCEEEEECCHHHHHHHEEECCEEEEECCEEEEEEECHHHHHHHHHHH
NIDLKTFKGGIINLKLRSNEFSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTID
CCCEEEECCCEEEEEECCCCCCCCCHHHHCCEEEEEEEECCCCHHHHHEEEEEEEEEEEE
LKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTYLFEGKANNQKVNLLLKGINK
EECCCCCCEEEEEHHHHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCCEEEEEEECCCC
TIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK
EEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEE
TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENS
EECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEECCCCCCCCEEEEECEEEEECCC
YIRIDITLLEDKIEKKYLTQSPNINPFLKNITLV
EEEEEEEEECHHHHHHHHCCCCCCCHHHHCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8932323; 9403685 [H]