Definition | Borrelia afzelii PKo plasmid lp28, complete sequence. |
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Accession | NC_008568 |
Length | 28,533 |
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The map label for this gene is 117621807
Identifier: 117621807
GI number: 117621807
Start: 7986
End: 8990
Strand: Direct
Name: 117621807
Synonym: BAPKO_4507
Alternate gene names: NA
Gene position: 7986-8990 (Clockwise)
Preceding gene: 117621805
Following gene: 117621808
Centisome position: 27.99
GC content: 23.78
Gene sequence:
>1005_bases ATGTCTAATCCCAATTTATATAAATTTCAAAGTGCATCTATAGGAGAAATCGTGTATACTGACCCAAGGTCAATTATTAA TACTTACTTTGTAAAAAACAAAAAAATATTCATTATCAACCCCATAGCTTTTAAATTTGAACTTAATTTTGAAAAAACTA TTCAAACAAACTTAAAAGAGAATATCGACCTTAAAACATTTAAAGGTGGAATTATTAATTTAAAATTAAGGTCAAATGAA TTTTCTAAATTACCAACAGACATTCTAAAGGGGAAACTTGAATTTTATATTAACTATGTAAGTGAAGAAAAACTTAAAAT AGTTTATGACATGATGATAGTAAAAGTTTATACGATTGATTTAAAAGCTAGCAACAAAGATAAAATTTGCCTAATCGGAC TTAAAATACTTGGTTCTATTTATAGAAAAGAAAATGTAGAAAATGCGTTTATTCCTATTATAAAAAATAATAATACTTAC CTTTTTGAAGGTAAAGCAAACAACCAAAAAGTTAATTTGTTATTAAAGGGCATTAATAAAACTATTCAACTTCCTTTTTT GACAAAAATAAGCTATTCAAATATCAAAATTATCAATAAAGCTGATATAAAAACTAGTGAAAATTCAAATGCAAACATTA AAGCAACAAATAGAATACTACTAAATCTAAGCACAAAAATCTATGAAGAACTAATTCTAACAAATTCAAATCAAATAAAA ACTATCAACAATAAACAAAAAATTCTCAAAACATTAAGATCTTTTATTGAAAACGAGAACGGATTAGGAGGCAAAATAAG GTTAATCTTTTTAGAAAAAACAAATTTTCTGACTAAAAATTTAAACTCAAATAACTTAGACTTTATTTTAAATGATATCA ATATTATACAAGAAAATAGCTATATCAGAATTGACATCACTTTACTAGAAGATAAAATTGAAAAAAAATACTTAACCCAA TCCCCAAACATAAACCCATTTCTTAAAAATATCACCTTGGTGTAA
Upstream 100 bases:
>100_bases ATTTAAATAAAAACATTCTAATTTTACAGCTTGAATTAAAATTAAAAAACTATTATTATTAGGTGTTGTTCTAACAAAAA CCAATTAAAAAGATTAGATT
Downstream 100 bases:
>100_bases ATTTTTTCAATCAGATATATTACATAATTTATCTCAGATATATAATCTAGTAATTATTAATAAAAACTCTACTAAAAGTA TTCAACATATAACCTACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MSNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKENIDLKTFKGGIINLKLRSNE FSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTIDLKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTY LFEGKANNQKVNLLLKGINKTIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENSYIRIDITLLEDKIEKKYLTQ SPNINPFLKNITLV
Sequences:
>Translated_334_residues MSNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKENIDLKTFKGGIINLKLRSNE FSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTIDLKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTY LFEGKANNQKVNLLLKGINKTIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENSYIRIDITLLEDKIEKKYLTQ SPNINPFLKNITLV >Mature_333_residues SNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKENIDLKTFKGGIINLKLRSNEF SKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTIDLKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTYL FEGKANNQKVNLLLKGINKTIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIKT INNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENSYIRIDITLLEDKIEKKYLTQS PNINPFLKNITLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38579; Mature: 38448
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKE CCCCCEEEECCCCCCEEEEECCHHHHHHHEEECCEEEEECCEEEEEEECHHHHHHHHHHH NIDLKTFKGGIINLKLRSNEFSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTID CCCEEEECCCEEEEEECCCCCCCCCHHHHCCEEEEEEEECCCCHHHHHEEEEEEEEEEEE LKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTYLFEGKANNQKVNLLLKGINK EECCCCCCEEEEEHHHHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCCEEEEEEECCCC TIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK EEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEE TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENS EECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEECCCCCCCCEEEEECEEEEECCC YIRIDITLLEDKIEKKYLTQSPNINPFLKNITLV EEEEEEEEECHHHHHHHHCCCCCCCHHHHCEECC >Mature Secondary Structure SNPNLYKFQSASIGEIVYTDPRSIINTYFVKNKKIFIINPIAFKFELNFEKTIQTNLKE CCCCEEEECCCCCCEEEEECCHHHHHHHEEECCEEEEECCEEEEEEECHHHHHHHHHHH NIDLKTFKGGIINLKLRSNEFSKLPTDILKGKLEFYINYVSEEKLKIVYDMMIVKVYTID CCCEEEECCCEEEEEECCCCCCCCCHHHHCCEEEEEEEECCCCHHHHHEEEEEEEEEEEE LKASNKDKICLIGLKILGSIYRKENVENAFIPIIKNNNTYLFEGKANNQKVNLLLKGINK EECCCCCCEEEEEHHHHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCCEEEEEEECCCC TIQLPFLTKISYSNIKIINKADIKTSENSNANIKATNRILLNLSTKIYEELILTNSNQIK EEEEEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEE TINNKQKILKTLRSFIENENGLGGKIRLIFLEKTNFLTKNLNSNNLDFILNDINIIQENS EECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEECCCCCCCCEEEEECEEEEECCC YIRIDITLLEDKIEKKYLTQSPNINPFLKNITLV EEEEEEEEECHHHHHHHHCCCCCCCHHHHCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8932323; 9403685 [H]