Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621805

Identifier: 117621805

GI number: 117621805

Start: 6396

End: 7079

Strand: Direct

Name: 117621805

Synonym: BAPKO_4505

Alternate gene names: NA

Gene position: 6396-7079 (Clockwise)

Preceding gene: 117621804

Following gene: 117621807

Centisome position: 22.42

GC content: 22.66

Gene sequence:

>684_bases
ATGAAAAATAAAACTTTTATATTCTTAGTACTTTTAATTCAAAATTTAGCAATATATTCTCATAGCACAAACTATGAATT
TAAACAAAATAAAATTAAAAATATAAAAGGAATATTTATTAATTATAAAGTCTATCTAACAGAAAATTTAGCAATTGATA
ATGTAAAAACCTTAAACCATATTTCCACATTCAAAATCAATCTTGTTATTGACAAGAAAATTGCGGCTTCTATTAAAAAT
GAACAAGATGTAATTAAAGCTGGAAATGAATGTGGAATCTTTTTAGAATTTCAAATTAATAACCGCATATACTATGCCAA
ATTTTCATCAATAAAATATATTTTAAAAGCAATTGAAAGTTTTACTAAAATTAAAAATACAATTAATAATTCTGAAATTA
AAAATCTTGAAGGCAATGGAATTTTTTTATACAAAAATGGTCTCTCGTATAATTTAAAAACAGACTTTCAAGAAACAGCA
ATATTTGTAAATTTTCTCGGGTTTAAAGATACTACTGGAAGACCTTACTTTATCTTTTACTATGACAATATAGATAATAA
AGATAAAAATTTAAAAACAATCTTAGTTTCCTTTGAAGAATTCCATAATGGAATAAGAGAAGGTCTATTCCTACTGAGAA
ACGAAAAAGCTATACTAGAATACATTAATCTTTCAAAAGATTGA

Upstream 100 bases:

>100_bases
CTATTTATATACCTAAATTTTTTATAAATTTCAGACACTTAATAGATAAAAACGGTTTACTAAAATTATTCAAGACTGCT
ATCATATAATAAGTTATATA

Downstream 100 bases:

>100_bases
TTGTAATAAAAAAAATAATATAAAAACAATTTTAAAGTCAATATTATTATAAATTAATATTAAAAAAACTTGTTTATACT
AAATATTCTTAATATATCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKNKTFIFLVLLIQNLAIYSHSTNYEFKQNKIKNIKGIFINYKVYLTENLAIDNVKTLNHISTFKINLVIDKKIAASIKN
EQDVIKAGNECGIFLEFQINNRIYYAKFSSIKYILKAIESFTKIKNTINNSEIKNLEGNGIFLYKNGLSYNLKTDFQETA
IFVNFLGFKDTTGRPYFIFYYDNIDNKDKNLKTILVSFEEFHNGIREGLFLLRNEKAILEYINLSKD

Sequences:

>Translated_227_residues
MKNKTFIFLVLLIQNLAIYSHSTNYEFKQNKIKNIKGIFINYKVYLTENLAIDNVKTLNHISTFKINLVIDKKIAASIKN
EQDVIKAGNECGIFLEFQINNRIYYAKFSSIKYILKAIESFTKIKNTINNSEIKNLEGNGIFLYKNGLSYNLKTDFQETA
IFVNFLGFKDTTGRPYFIFYYDNIDNKDKNLKTILVSFEEFHNGIREGLFLLRNEKAILEYINLSKD
>Mature_227_residues
MKNKTFIFLVLLIQNLAIYSHSTNYEFKQNKIKNIKGIFINYKVYLTENLAIDNVKTLNHISTFKINLVIDKKIAASIKN
EQDVIKAGNECGIFLEFQINNRIYYAKFSSIKYILKAIESFTKIKNTINNSEIKNLEGNGIFLYKNGLSYNLKTDFQETA
IFVNFLGFKDTTGRPYFIFYYDNIDNKDKNLKTILVSFEEFHNGIREGLFLLRNEKAILEYINLSKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26516; Mature: 26516

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKTFIFLVLLIQNLAIYSHSTNYEFKQNKIKNIKGIFINYKVYLTENLAIDNVKTLNH
CCCCEEEEEEHHHHHHHEEECCCCCEEHHHHHCCEEEEEEEEEEEEEECEEECCCHHHCC
ISTFKINLVIDKKIAASIKNEQDVIKAGNECGIFLEFQINNRIYYAKFSSIKYILKAIES
EEEEEEEEEECCHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEEEEHHHHHHHHHHHHH
FTKIKNTINNSEIKNLEGNGIFLYKNGLSYNLKTDFQETAIFVNFLGFKDTTGRPYFIFY
HHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCHHHEEEEEEECCCCCCCCEEEEEE
YDNIDNKDKNLKTILVSFEEFHNGIREGLFLLRNEKAILEYINLSKD
ECCCCCCCCCEEEEEEEHHHHHHHHHHHHEEEECCHHHHHHHCCCCC
>Mature Secondary Structure
MKNKTFIFLVLLIQNLAIYSHSTNYEFKQNKIKNIKGIFINYKVYLTENLAIDNVKTLNH
CCCCEEEEEEHHHHHHHEEECCCCCEEHHHHHCCEEEEEEEEEEEEEECEEECCCHHHCC
ISTFKINLVIDKKIAASIKNEQDVIKAGNECGIFLEFQINNRIYYAKFSSIKYILKAIES
EEEEEEEEEECCHHHHHCCCCHHHHHCCCCCEEEEEEEECCEEEEEEHHHHHHHHHHHHH
FTKIKNTINNSEIKNLEGNGIFLYKNGLSYNLKTDFQETAIFVNFLGFKDTTGRPYFIFY
HHHHHHHCCCCCCCCCCCCEEEEEECCCEEEEECCCHHHEEEEEEECCCCCCCCEEEEEE
YDNIDNKDKNLKTILVSFEEFHNGIREGLFLLRNEKAILEYINLSKD
ECCCCCCCCCEEEEEEEHHHHHHHHHHHHEEEECCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA