Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621808

Identifier: 117621808

GI number: 117621808

Start: 9140

End: 9466

Strand: Direct

Name: 117621808

Synonym: BAPKO_4508

Alternate gene names: NA

Gene position: 9140-9466 (Clockwise)

Preceding gene: 117621807

Following gene: 117621809

Centisome position: 32.03

GC content: 25.08

Gene sequence:

>327_bases
ATGTTAAGTATTAATGGTGTAAGACTTTATTCTTTAAAAGAATTCCAAAATATATTAGAAGATTCTTATAATCTTTCAAT
TAGCAAAAATACTATATCTAAAAAATCAAAAATTTTAAAATGCGCAATCCGTGTGGACAACCGCCCTTATCTTTTAGAAG
ATTTTTGTACATATTTTTTAATGGATTTCAGAAGACCTAAACCTATAACAAATAGCATAAAAGAAACAATCCAATTAAGA
ATTGAGCAAGCAAAAAAAATAATGAACCGAAAATCTACAAAACATGAAATACAAATTGTTTCTAAACCCATAGGTCATAT
ATTATAA

Upstream 100 bases:

>100_bases
GTAATTATTAATAAAAACTCTACTAAAAGTATTCAACATATAACCTACCTCCTTGAAACTAACATACAATATATAATAAA
ATAAAGCTAATGAGGTATTT

Downstream 100 bases:

>100_bases
TCCATTATATTGACATTTTAAAAACATTGTTATAAAATGTAGTCAAAAGCTAATTATTTTGTTTGTAATACAATAAAAAT
TTAGAGTGCAGACCAAATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLR
IEQAKKIMNRKSTKHEIQIVSKPIGHIL

Sequences:

>Translated_108_residues
MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLR
IEQAKKIMNRKSTKHEIQIVSKPIGHIL
>Mature_108_residues
MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLR
IEQAKKIMNRKSTKHEIQIVSKPIGHIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12700; Mature: 12700

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFL
CCCCCCEEEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHH
MDFRRPKPITNSIKETIQLRIEQAKKIMNRKSTKHEIQIVSKPIGHIL
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFL
CCCCCCEEEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHH
MDFRRPKPITNSIKETIQLRIEQAKKIMNRKSTKHEIQIVSKPIGHIL
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA