Definition | Borrelia afzelii PKo plasmid lp28, complete sequence. |
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Accession | NC_008568 |
Length | 28,533 |
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The map label for this gene is 117621808
Identifier: 117621808
GI number: 117621808
Start: 9140
End: 9466
Strand: Direct
Name: 117621808
Synonym: BAPKO_4508
Alternate gene names: NA
Gene position: 9140-9466 (Clockwise)
Preceding gene: 117621807
Following gene: 117621809
Centisome position: 32.03
GC content: 25.08
Gene sequence:
>327_bases ATGTTAAGTATTAATGGTGTAAGACTTTATTCTTTAAAAGAATTCCAAAATATATTAGAAGATTCTTATAATCTTTCAAT TAGCAAAAATACTATATCTAAAAAATCAAAAATTTTAAAATGCGCAATCCGTGTGGACAACCGCCCTTATCTTTTAGAAG ATTTTTGTACATATTTTTTAATGGATTTCAGAAGACCTAAACCTATAACAAATAGCATAAAAGAAACAATCCAATTAAGA ATTGAGCAAGCAAAAAAAATAATGAACCGAAAATCTACAAAACATGAAATACAAATTGTTTCTAAACCCATAGGTCATAT ATTATAA
Upstream 100 bases:
>100_bases GTAATTATTAATAAAAACTCTACTAAAAGTATTCAACATATAACCTACCTCCTTGAAACTAACATACAATATATAATAAA ATAAAGCTAATGAGGTATTT
Downstream 100 bases:
>100_bases TCCATTATATTGACATTTTAAAAACATTGTTATAAAATGTAGTCAAAAGCTAATTATTTTGTTTGTAATACAATAAAAAT TTAGAGTGCAGACCAAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 108; Mature: 108
Protein sequence:
>108_residues MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLR IEQAKKIMNRKSTKHEIQIVSKPIGHIL
Sequences:
>Translated_108_residues MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLR IEQAKKIMNRKSTKHEIQIVSKPIGHIL >Mature_108_residues MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFLMDFRRPKPITNSIKETIQLR IEQAKKIMNRKSTKHEIQIVSKPIGHIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12700; Mature: 12700
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFL CCCCCCEEEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHH MDFRRPKPITNSIKETIQLRIEQAKKIMNRKSTKHEIQIVSKPIGHIL HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MLSINGVRLYSLKEFQNILEDSYNLSISKNTISKKSKILKCAIRVDNRPYLLEDFCTYFL CCCCCCEEEHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHH MDFRRPKPITNSIKETIQLRIEQAKKIMNRKSTKHEIQIVSKPIGHIL HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA