Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116690009
Identifier: 116690009
GI number: 116690009
Start: 2204244
End: 2204819
Strand: Direct
Name: 116690009
Synonym: Bcen2424_1988
Alternate gene names: NA
Gene position: 2204244-2204819 (Clockwise)
Preceding gene: 116690008
Following gene: 116690015
Centisome position: 63.27
GC content: 56.94
Gene sequence:
>576_bases ATGTCTGCCCTCCCGCAGAACCCGATTGCGCCATCCGGAACTACCGATCGCATCACACTGCCCGCCTCGGCAGCAGACAC CTTGAGCATGCTGGTGCGCTACAAGTCCTGGGCGAACGGACTGACGTTCAAGAGCGTGATGGACCTACCGGCTGGCGAAG CCCTTCGGCAGAGACCAACGCGGTTCGGAAACATGGTGCATACCTTGAATCATGTCTATGTAGTCGACGACATTTTCAGA CATCATCTGCAAGGAAAGAAGCACACCTACACCTCGCGCAACACCGACCACACGCCTGCAGTTTCCGATCTCTGGAACGC GGTTCAGGAAATGGACCGCTGGTACGTCGAGCTTGTCGACAACTGGTCGGACGAGGATCTCGCGACAGCCATTCGTTTCG AGTTTGTGGGTGGGGGAGAAGGCGTCATGACCCGCGAGCAGATCGTGCTGCATGTCGTCAATCACGCGACCTATCACCGC GGCTTTGTCGGCGACATGATGTATCAGGTGCCTTTTGTGCCGCCGTCAAATGATCTTCCGGTATTCATCAGGGATCACTA TCGCGACGCTCGGTGA
Upstream 100 bases:
>100_bases CCGAGCAGCTTGCGCGCAGGACTACTACCGGTGTGGCACGACGACACCGGATCAACCCGAGCATTGTTCCGACGTTCGAA ACCACGCAAGGAGTTTCAGC
Downstream 100 bases:
>100_bases GCGCCCGGTCGCTGGCCCGGCGCTCACCCGCCACTTGTCTCGTCCGACGCCAGCCTGTTCCGCCGGACGCCGGCCGCCAT CGATAGCCGCCGCAACACAT
Product: DinB family protein
Products: NA
Alternate protein names: DNA Damage-Inducible Gene; DinB Family
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MSALPQNPIAPSGTTDRITLPASAADTLSMLVRYKSWANGLTFKSVMDLPAGEALRQRPTRFGNMVHTLNHVYVVDDIFR HHLQGKKHTYTSRNTDHTPAVSDLWNAVQEMDRWYVELVDNWSDEDLATAIRFEFVGGGEGVMTREQIVLHVVNHATYHR GFVGDMMYQVPFVPPSNDLPVFIRDHYRDAR
Sequences:
>Translated_191_residues MSALPQNPIAPSGTTDRITLPASAADTLSMLVRYKSWANGLTFKSVMDLPAGEALRQRPTRFGNMVHTLNHVYVVDDIFR HHLQGKKHTYTSRNTDHTPAVSDLWNAVQEMDRWYVELVDNWSDEDLATAIRFEFVGGGEGVMTREQIVLHVVNHATYHR GFVGDMMYQVPFVPPSNDLPVFIRDHYRDAR >Mature_190_residues SALPQNPIAPSGTTDRITLPASAADTLSMLVRYKSWANGLTFKSVMDLPAGEALRQRPTRFGNMVHTLNHVYVVDDIFRH HLQGKKHTYTSRNTDHTPAVSDLWNAVQEMDRWYVELVDNWSDEDLATAIRFEFVGGGEGVMTREQIVLHVVNHATYHRG FVGDMMYQVPFVPPSNDLPVFIRDHYRDAR
Specific function: Unknown
COG id: COG2318
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21753; Mature: 21622
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSALPQNPIAPSGTTDRITLPASAADTLSMLVRYKSWANGLTFKSVMDLPAGEALRQRPT CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCHH RFGNMVHTLNHVYVVDDIFRHHLQGKKHTYTSRNTDHTPAVSDLWNAVQEMDRWYVELVD HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NWSDEDLATAIRFEFVGGGEGVMTREQIVLHVVNHATYHRGFVGDMMYQVPFVPPSNDLP CCCCHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCE VFIRDHYRDAR EEEECCCCCCC >Mature Secondary Structure SALPQNPIAPSGTTDRITLPASAADTLSMLVRYKSWANGLTFKSVMDLPAGEALRQRPT CCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCHH RFGNMVHTLNHVYVVDDIFRHHLQGKKHTYTSRNTDHTPAVSDLWNAVQEMDRWYVELVD HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH NWSDEDLATAIRFEFVGGGEGVMTREQIVLHVVNHATYHRGFVGDMMYQVPFVPPSNDLP CCCCHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCE VFIRDHYRDAR EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA