Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is yeiH [C]
Identifier: 116689757
GI number: 116689757
Start: 1927673
End: 1928758
Strand: Direct
Name: yeiH [C]
Synonym: Bcen2424_1736
Alternate gene names: 116689757
Gene position: 1927673-1928758 (Clockwise)
Preceding gene: 116689747
Following gene: 116689758
Centisome position: 55.33
GC content: 70.17
Gene sequence:
>1086_bases ATGTCCACTGCTCCGACTCCCCCTCTCAGCCACGCCGCGCCGTCGATGCGCGGCCAGTTGAACGGCGTGCTGTTCGTCGC GCTGTTCGCCGCTGCCGTCACGAGCCTGTCCGAGCTTCCCGCGATCGCGGGGCTCGGCCTGTCGCCGCTGATCGTCGGCA TCGTCGCCGGCGCGCTGTACGGCAACGCACTGCGCGACGGCATGCCGGCCAGCTGGGCGGCCGGCGTCAATTTCTCCGCC CGCAAGCTGCTGCGCATCGCGGTCGCGTTCTTCGGCTTGCGCGTGAGCCTGCAGGAGATCGCGCAGGTCGGGCTGCCGGG CCTCGCGGTGTCGGTACTGATCGTCGTCAGCACGCTCGCGATCGGCACCTGGGTCGGCATGAAGCTGATGAAGCTCGACC GCGACGCCGCGCTGCTGACCGCCGCCGGCAGCGCGATCTGCGGCGCGGCCGCGGTGCTCGCGTTCGAGTCGACGCTGCAG TCGAAGCCGCACCAGAGCGCGATGGCGGTGGGCAGCGTCGTGCTGTTCGGCACGCTGTCGATGTTCCTGTATCCGCTCGC CTACCACGCCGGGCTGCTGAACCTCGATCCGGCCGGCCTCGGCCTGTTCTTCGGCGGCACGATCCACGAAGTCGCGCAGG TGGTCGGCGCGGCGAGCGACATCAGCCCGGAGGTCGTGCACGTCGCGACGATCGTGAAGATGACGCGCGTGATGCTGCTG GTGCCCGTGCTGCTCGCGCTCGGCTGGTGGCTCGCCCGTTCGTCCCGTTCCGCGCGCGCGGCTCACGACACGGCCGGCGG CACGCACCGCCAGCGCAAGGTGGCGGTGCCCTGGTTCGCGCTCGGCTTCCTCGGCTTCGTGATCGTCAATTCGCTGAACG TATTGCCCGCGGACGTCACGCATACGCTGAACGTGCTCGACACCTTCGCGCTGACGATGGCCATGACCGCACTCGGCATC GAGACGCGCGTCGCGCAGATCCGCGCGGCCGGCCCGCGTGCGCTGATGACCGGCCTGATCCTGAACGTGTGGCTGATCGC CGGCGGCTACGGGATCACCTGGGCCGTGCAGCACTGGCTTGGCTGA
Upstream 100 bases:
>100_bases ATCGGCTTTCCGGATAGTTTACGTCACAAATCACAATTTTTCATATCGATATAACGAAATTAGGATTACACCATCGCCAC ACGCTCCATCACGGTGCTCC
Downstream 100 bases:
>100_bases GCCGCACGTCCGCGACGGTTCGCGCGCCGCGCCCGACGGGAAGCCCCACGAGGCGGTCCCGCGGGCGCGGCGCAGTGCTA TGCTTCGCGTCGTTTTCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSTAPTPPLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALYGNALRDGMPASWAAGVNFSA RKLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLIVVSTLAIGTWVGMKLMKLDRDAALLTAAGSAICGAAAVLAFESTLQ SKPHQSAMAVGSVVLFGTLSMFLYPLAYHAGLLNLDPAGLGLFFGGTIHEVAQVVGAASDISPEVVHVATIVKMTRVMLL VPVLLALGWWLARSSRSARAAHDTAGGTHRQRKVAVPWFALGFLGFVIVNSLNVLPADVTHTLNVLDTFALTMAMTALGI ETRVAQIRAAGPRALMTGLILNVWLIAGGYGITWAVQHWLG
Sequences:
>Translated_361_residues MSTAPTPPLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALYGNALRDGMPASWAAGVNFSA RKLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLIVVSTLAIGTWVGMKLMKLDRDAALLTAAGSAICGAAAVLAFESTLQ SKPHQSAMAVGSVVLFGTLSMFLYPLAYHAGLLNLDPAGLGLFFGGTIHEVAQVVGAASDISPEVVHVATIVKMTRVMLL VPVLLALGWWLARSSRSARAAHDTAGGTHRQRKVAVPWFALGFLGFVIVNSLNVLPADVTHTLNVLDTFALTMAMTALGI ETRVAQIRAAGPRALMTGLILNVWLIAGGYGITWAVQHWLG >Mature_360_residues STAPTPPLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALYGNALRDGMPASWAAGVNFSAR KLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLIVVSTLAIGTWVGMKLMKLDRDAALLTAAGSAICGAAAVLAFESTLQS KPHQSAMAVGSVVLFGTLSMFLYPLAYHAGLLNLDPAGLGLFFGGTIHEVAQVVGAASDISPEVVHVATIVKMTRVMLLV PVLLALGWWLARSSRSARAAHDTAGGTHRQRKVAVPWFALGFLGFVIVNSLNVLPADVTHTLNVLDTFALTMAMTALGIE TRVAQIRAAGPRALMTGLILNVWLIAGGYGITWAVQHWLG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=320, Percent_Identity=39.0625, Blast_Score=220, Evalue=1e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004630 - InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 37480; Mature: 37349
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAPTPPLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GNALRDGMPASWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLIVVSTLA HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IGTWVGMKLMKLDRDAALLTAAGSAICGAAAVLAFESTLQSKPHQSAMAVGSVVLFGTLS HHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MFLYPLAYHAGLLNLDPAGLGLFFGGTIHEVAQVVGAASDISPEVVHVATIVKMTRVMLL HHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VPVLLALGWWLARSSRSARAAHDTAGGTHRQRKVAVPWFALGFLGFVIVNSLNVLPADVT HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCHHH HTLNVLDTFALTMAMTALGIETRVAQIRAAGPRALMTGLILNVWLIAGGYGITWAVQHWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHC G C >Mature Secondary Structure STAPTPPLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALY CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GNALRDGMPASWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGLPGLAVSVLIVVSTLA HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH IGTWVGMKLMKLDRDAALLTAAGSAICGAAAVLAFESTLQSKPHQSAMAVGSVVLFGTLS HHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MFLYPLAYHAGLLNLDPAGLGLFFGGTIHEVAQVVGAASDISPEVVHVATIVKMTRVMLL HHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VPVLLALGWWLARSSRSARAAHDTAGGTHRQRKVAVPWFALGFLGFVIVNSLNVLPADVT HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCCCHHH HTLNVLDTFALTMAMTALGIETRVAQIRAAGPRALMTGLILNVWLIAGGYGITWAVQHWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]