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The map label for this gene is yfdE [H]

Identifier: 116689713

GI number: 116689713

Start: 1879373

End: 1880563

Strand: Direct

Name: yfdE [H]

Synonym: Bcen2424_1691

Alternate gene names: 116689713

Gene position: 1879373-1880563 (Clockwise)

Preceding gene: 116689711

Following gene: 116689714

Centisome position: 53.94

GC content: 71.12

Gene sequence:

>1191_bases
ATGACACGCCCCCTGGACGGCATCCGCGTGCTGGAGCTTGGCCAATTGATCGCCGGGCCGTTCGCGGGCCGGATGCTCGC
CGAATTCGGCGCGGAGGTCATCAAGGTCGAGCCGCCCGGCGTCGGCGATCCGCTGCGCAAATGGCGGCTGCTGCACGACG
GCACGTCGGTCTGGTGGGCCGCGCAGTCGCGCAACAAGACCTCGCTCACGCTCGATCTGCGCACGCCCGAAGGGCAGGAC
GTCGTGCGCCGCCTCGTCGCCGACACCGACGTGCTGATCGAAAACTTCCGGCCCGGCACGCTCGAAGGCTGGGGGCTCGG
CTGGGACGCACTGTCCGCGATCAACCCGGGGCTCGTGATGCTGCGCGTGTCGGGCTTCGGGCAGACGGGCCCGTATCGCG
ACCGGCCCGGCTTCGGCGTGATCGCCGAAGCAATGGGCGGCCTGCGCCACCTGACCGGCGAACCGGGCCGCACGCCGGTG
CGCGTCGGCATCTCGCTCGGCGATTCGCTGTCGGCACTGCATGGCGTGATCGGCGTGCTGCTCGCGTTGCGCCATCGCGA
ACGGCAGGGCGGCAAGGGGCAGGTCGTCGACGTCGCGCTGTACGAATCGGTGTTCAACATGATGGAAAGCCTGCTGCCCG
AATATGCGGCGTTCGGCGCGGTGCGCGAGCCGGCCGGCAGCAGCCTGCCGGGCATCGCGCCGACCAACGCGTACCGTTGC
CGCGATGGCAAGTACGCGCTGATCGCCGGCAACGGCGACAGCATCTTCCGGCGCCTGATGGAACTGATCGGTCGGCCCGA
TCTCGGCAACGATCCGGCGCTCGCCCGCAACGACGGGCGCGTCGCGCAGGTCGCGCGCATCGATGCGGCGATCGGCGAAT
GGAGCGCCCGCCACGACCTCGACGACGTGCTCGCCGCGCTGAACGACGCGCGCATTCCGTCCGGACGCATCTACGACGTG
GCCGACATCGCGGCCGATCCGCACTACCGTGCGCGCGACATGATCGTCGACGCCGCGCTGCCCGACGGCACGCCCGTGCT
GGTGCCGGGCATCGTGCCGAAACTCGACGCGACGCCCGGGCGCATCGAGCGACCGGCGCCCGCGCTCGGCGCGGATACCG
ACGCGGTCCTCGAATCGCTCGGCATCGATGCGGCGACGCGCGACGACTGGCGCACGCGCGGCGTGATCTGA

Upstream 100 bases:

>100_bases
TCCGTTTCGGAAAGGCGGGTTGACCATCGATCGATTTTCGCCGGGCGCGAACGCCGTCATGATCGCCGTTATCGACAACA
CGCTTTCATCGGAGACAGTC

Downstream 100 bases:

>100_bases
CACAACCATCGGGACGAACCCATGAACCGGCATCCGCAACGACTCCATATCCACGAAGTCGCGACTCGCGACGGTTTCCA
GAACGAGGCCGCGTTCGTCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGAEVIKVEPPGVGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQD
VVRRLVADTDVLIENFRPGTLEGWGLGWDALSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPV
RVGISLGDSLSALHGVIGVLLALRHRERQGGKGQVVDVALYESVFNMMESLLPEYAAFGAVREPAGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALARNDGRVAQVARIDAAIGEWSARHDLDDVLAALNDARIPSGRIYDV
ADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLDATPGRIERPAPALGADTDAVLESLGIDAATRDDWRTRGVI

Sequences:

>Translated_396_residues
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGAEVIKVEPPGVGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQD
VVRRLVADTDVLIENFRPGTLEGWGLGWDALSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPV
RVGISLGDSLSALHGVIGVLLALRHRERQGGKGQVVDVALYESVFNMMESLLPEYAAFGAVREPAGSSLPGIAPTNAYRC
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALARNDGRVAQVARIDAAIGEWSARHDLDDVLAALNDARIPSGRIYDV
ADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLDATPGRIERPAPALGADTDAVLESLGIDAATRDDWRTRGVI
>Mature_395_residues
TRPLDGIRVLELGQLIAGPFAGRMLAEFGAEVIKVEPPGVGDPLRKWRLLHDGTSVWWAAQSRNKTSLTLDLRTPEGQDV
VRRLVADTDVLIENFRPGTLEGWGLGWDALSAINPGLVMLRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVR
VGISLGDSLSALHGVIGVLLALRHRERQGGKGQVVDVALYESVFNMMESLLPEYAAFGAVREPAGSSLPGIAPTNAYRCR
DGKYALIAGNGDSIFRRLMELIGRPDLGNDPALARNDGRVAQVARIDAAIGEWSARHDLDDVLAALNDARIPSGRIYDVA
DIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLDATPGRIERPAPALGADTDAVLESLGIDAATRDDWRTRGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=29.287598944591, Blast_Score=193, Evalue=3e-49,
Organism=Homo sapiens, GI300863124, Length=378, Percent_Identity=29.6296296296296, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI300863126, Length=379, Percent_Identity=27.1767810026385, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI13376042, Length=378, Percent_Identity=25.9259259259259, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266456254, Length=393, Percent_Identity=29.0076335877863, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI42794625, Length=393, Percent_Identity=29.0076335877863, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=33.8403041825095, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=33.8461538461538, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=39.041095890411, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=39.7260273972603, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI87082093, Length=350, Percent_Identity=33.1428571428571, Blast_Score=208, Evalue=4e-55,
Organism=Escherichia coli, GI1788717, Length=403, Percent_Identity=31.0173697270471, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1786222, Length=401, Percent_Identity=28.6783042394015, Blast_Score=150, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI115535051, Length=311, Percent_Identity=27.9742765273312, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=267, Percent_Identity=30.3370786516854, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24648431, Length=381, Percent_Identity=31.496062992126, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24585488, Length=360, Percent_Identity=30.8333333333333, Blast_Score=121, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42422; Mature: 42291

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLDGIRVLELGQLIAGPFAGRMLAEFGAEVIKVEPPGVGDPLRKWRLLHDGTSVWWA
CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEE
AQSRNKTSLTLDLRTPEGQDVVRRLVADTDVLIENFRPGTLEGWGLGWDALSAINPGLVM
ECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEE
LRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVRVGISLGDSLSALHGVIGVL
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
LALRHRERQGGKGQVVDVALYESVFNMMESLLPEYAAFGAVREPAGSSLPGIAPTNAYRC
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALARNDGRVAQVARIDAAIGEWSARHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCHHHCCH
DDVLAALNDARIPSGRIYDVADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLDATPG
HHHHHHHHHCCCCCCCEEEHHHHCCCCCCCHHHEEEEECCCCCCEEEECCCCCCCCCCCC
RIERPAPALGADTDAVLESLGIDAATRDDWRTRGVI
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
TRPLDGIRVLELGQLIAGPFAGRMLAEFGAEVIKVEPPGVGDPLRKWRLLHDGTSVWWA
CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEE
AQSRNKTSLTLDLRTPEGQDVVRRLVADTDVLIENFRPGTLEGWGLGWDALSAINPGLVM
ECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEE
LRVSGFGQTGPYRDRPGFGVIAEAMGGLRHLTGEPGRTPVRVGISLGDSLSALHGVIGVL
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
LALRHRERQGGKGQVVDVALYESVFNMMESLLPEYAAFGAVREPAGSSLPGIAPTNAYRC
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
RDGKYALIAGNGDSIFRRLMELIGRPDLGNDPALARNDGRVAQVARIDAAIGEWSARHDL
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCHHHCCH
DDVLAALNDARIPSGRIYDVADIAADPHYRARDMIVDAALPDGTPVLVPGIVPKLDATPG
HHHHHHHHHCCCCCCCEEEHHHHCCCCCCCHHHEEEEECCCCCCEEEECCCCCCCCCCCC
RIERPAPALGADTDAVLESLGIDAATRDDWRTRGVI
CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]