| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689459
Identifier: 116689459
GI number: 116689459
Start: 1585115
End: 1586476
Strand: Direct
Name: 116689459
Synonym: Bcen2424_1437
Alternate gene names: NA
Gene position: 1585115-1586476 (Clockwise)
Preceding gene: 116689458
Following gene: 116689460
Centisome position: 45.5
GC content: 71.37
Gene sequence:
>1362_bases GTGACGACGCGAATCACGCAGCGCACGGTGAACCTGCGCACGGCGGCGCTGCGCGCGGCCTGCGCGGTCGCGTTGGCGTT CGCCGCGCAGCAGGCCGCGGCGCAGCCGCCCGCCGCCGCGGGCAAGACGGTCGTCTATCGCACGCAGGCCGGCGACACGC TGTACGACGTCGCCGCGCGCTACCTGCAGGGCGCGGACGACTGGCAACTGCTCCAGCAGATCAACGGCGTGCCGGCGCCG AAGCGCCTGCAGCCCGGCATCGCGCTGAAGCTGCCGGTCGCGCGCCTGCGCAAGGAAAAGCTCACCGCGCGCGTGATCGC GGTGCAGGGCACGGCCGAGCGTGCGTCCGGCGCGGCTTTCGCGCCGCTCGCGAACGATGCGACGCTCGCCGAAGGCGATC GCGTGCGCACCGGCCCGAACGGCTTCGTGACGATCGAGCTGGCCGACGGCACGCACATGAGCCTGCCGCCCGACAGCCAG CTTGACCTGAAATCGCTGCGCCGCACGGTGCTGACCGGCACGCTCGATCGCGAGTTCGAACTCACGCGCGGCTCGGTCGA CAGCGAAGTCACCCACCTGAAGAAACGCGACGACCGCTTCCAGATCCGCTCGCCGTCGGTCGTGGCCGGCGTGCGCGGCA CGCGCTTTCGCGTGAACTACGACGCGGCCGGCACGGCGACGACGCGCGTCGAAGTGCTCGACGGCACCGTCGGCGTCGCG GGCGGCCGGCAGTCGGCCGACGCGACGCTCGTGCATGCGAATTTCGGCAGCGTCGCGACGTCGTCCGGCGCGGTCGGCGC GCCCGTCCAGCTGCTGGGCGCCCCCGCGCTCGCGCATCCCGACAAGGTGCAGGACGAGCCCGACGTCGCATTCGACGTCA CGCCGCTCGCGCAGGCGCATGCGTATCGCGTGCAGCTCGCGCACGATGCGGGGCTGCTCGACCTGTTCCGCGAAACGCGC ACCGATTCGCCGCGCGCGGTGTTCCGCGACGTGCCGAACGGCAACTACTTCGTGCGGATCGCCGCGATCGATGCGAACGG CCTCGAGGGGCTGCCGCGCACCTATGCGTTCGAACGCCGCGTGATGGGGCTCGACGCGAGCGCGTCGCAGGGCGCGGGCG GTTACGAGTTCCGCTGGTCGCCGAACGGCTCGGGCAAGAATGCGCGTTACCGGTTCGTGTTGTCGCGCTCGAAGGACCTG AGCGCGCCGGTCGTCGACCAAGTCGGCCTGCACGCGCGCCAGATCACCGTCGCGCACCTGCCGCCGGGCGACTATTTCTG GGCCGTGACCGTCGAGGAATTCGAAGGCGGCAAGTTCTACGAGAAGACCAGTCCGGTCAGCGCGTTCACGTTGTCGCGCT GA
Upstream 100 bases:
>100_bases TGCGCACGAAGCTCGGCCTGCGGCCCGAGAACGGCTACCGTCTCGCGCCGATCTACGGGTACGGCTACCGGCTCGAACGG GTCGGCCAGGGGGAACCGGA
Downstream 100 bases:
>100_bases TCCGCGGCGCATGAAACCCGACTCCGTTTCTCCGCGGCGGCACCTCGGCCGCCGCTTCCTGATCGAATGGATCGCGATCG GCTGCCTCGGGATCGCGGTG
Product: peptidoglycan-binding LysM
Products: NA
Alternate protein names: FecR Protein; LysM Cell Wall-Like Protein; LysM Domain-Containing; LysM Motif-Containing Protein; LysM Domain Protein
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MTTRITQRTVNLRTAALRAACAVALAFAAQQAAAQPPAAAGKTVVYRTQAGDTLYDVAARYLQGADDWQLLQQINGVPAP KRLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGAAFAPLANDATLAEGDRVRTGPNGFVTIELADGTHMSLPPDSQ LDLKSLRRTVLTGTLDREFELTRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTRFRVNYDAAGTATTRVEVLDGTVGVA GGRQSADATLVHANFGSVATSSGAVGAPVQLLGAPALAHPDKVQDEPDVAFDVTPLAQAHAYRVQLAHDAGLLDLFRETR TDSPRAVFRDVPNGNYFVRIAAIDANGLEGLPRTYAFERRVMGLDASASQGAGGYEFRWSPNGSGKNARYRFVLSRSKDL SAPVVDQVGLHARQITVAHLPPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR
Sequences:
>Translated_453_residues MTTRITQRTVNLRTAALRAACAVALAFAAQQAAAQPPAAAGKTVVYRTQAGDTLYDVAARYLQGADDWQLLQQINGVPAP KRLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGAAFAPLANDATLAEGDRVRTGPNGFVTIELADGTHMSLPPDSQ LDLKSLRRTVLTGTLDREFELTRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTRFRVNYDAAGTATTRVEVLDGTVGVA GGRQSADATLVHANFGSVATSSGAVGAPVQLLGAPALAHPDKVQDEPDVAFDVTPLAQAHAYRVQLAHDAGLLDLFRETR TDSPRAVFRDVPNGNYFVRIAAIDANGLEGLPRTYAFERRVMGLDASASQGAGGYEFRWSPNGSGKNARYRFVLSRSKDL SAPVVDQVGLHARQITVAHLPPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR >Mature_452_residues TTRITQRTVNLRTAALRAACAVALAFAAQQAAAQPPAAAGKTVVYRTQAGDTLYDVAARYLQGADDWQLLQQINGVPAPK RLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGAAFAPLANDATLAEGDRVRTGPNGFVTIELADGTHMSLPPDSQL DLKSLRRTVLTGTLDREFELTRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTRFRVNYDAAGTATTRVEVLDGTVGVAG GRQSADATLVHANFGSVATSSGAVGAPVQLLGAPALAHPDKVQDEPDVAFDVTPLAQAHAYRVQLAHDAGLLDLFRETRT DSPRAVFRDVPNGNYFVRIAAIDANGLEGLPRTYAFERRVMGLDASASQGAGGYEFRWSPNGSGKNARYRFVLSRSKDLS APVVDQVGLHARQITVAHLPPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR
Specific function: Unknown
COG id: COG4254
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48530; Mature: 48399
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTRITQRTVNLRTAALRAACAVALAFAAQQAAAQPPAAAGKTVVYRTQAGDTLYDVAAR CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH YLQGADDWQLLQQINGVPAPKRLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGAAF HHCCCCHHHHHHHHCCCCCCHHCCCCCEEECCHHHHHHHCCEEEEEEEECCHHHCCCCEE APLANDATLAEGDRVRTGPNGFVTIELADGTHMSLPPDSQLDLKSLRRTVLTGTLDREFE CCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEE LTRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTRFRVNYDAAGTATTRVEVLDGTVGVA ECCCCCCHHHHHHHHCCCCEEECCCCEEECCCCCEEEEEECCCCCCEEEEEEECCEEECC GGRQSADATLVHANFGSVATSSGAVGAPVQLLGAPALAHPDKVQDEPDVAFDVTPLAQAH CCCCCCCEEEEEECCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCHHCCC AYRVQLAHDAGLLDLFRETRTDSPRAVFRDVPNGNYFVRIAAIDANGLEGLPRTYAFERR EEEEEEECCCCHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH VMGLDASASQGAGGYEFRWSPNGSGKNARYRFVLSRSKDLSAPVVDQVGLHARQITVAHL EECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCEEEEEEEEC PPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR CCCCEEEEEEEEECCCCEEEECCCCCCEEEECC >Mature Secondary Structure TTRITQRTVNLRTAALRAACAVALAFAAQQAAAQPPAAAGKTVVYRTQAGDTLYDVAAR CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH YLQGADDWQLLQQINGVPAPKRLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGAAF HHCCCCHHHHHHHHCCCCCCHHCCCCCEEECCHHHHHHHCCEEEEEEEECCHHHCCCCEE APLANDATLAEGDRVRTGPNGFVTIELADGTHMSLPPDSQLDLKSLRRTVLTGTLDREFE CCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEE LTRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTRFRVNYDAAGTATTRVEVLDGTVGVA ECCCCCCHHHHHHHHCCCCEEECCCCEEECCCCCEEEEEECCCCCCEEEEEEECCEEECC GGRQSADATLVHANFGSVATSSGAVGAPVQLLGAPALAHPDKVQDEPDVAFDVTPLAQAH CCCCCCCEEEEEECCCCEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCHHCCC AYRVQLAHDAGLLDLFRETRTDSPRAVFRDVPNGNYFVRIAAIDANGLEGLPRTYAFERR EEEEEEECCCCHHHHHHHHCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH VMGLDASASQGAGGYEFRWSPNGSGKNARYRFVLSRSKDLSAPVVDQVGLHARQITVAHL EECCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCEEEEEEEEC PPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR CCCCEEEEEEEEECCCCEEEECCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA