| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yycG [H]
Identifier: 116689460
GI number: 116689460
Start: 1586487
End: 1588874
Strand: Direct
Name: yycG [H]
Synonym: Bcen2424_1438
Alternate gene names: 116689460
Gene position: 1586487-1588874 (Clockwise)
Preceding gene: 116689459
Following gene: 116689461
Centisome position: 45.54
GC content: 69.56
Gene sequence:
>2388_bases ATGAAACCCGACTCCGTTTCTCCGCGGCGGCACCTCGGCCGCCGCTTCCTGATCGAATGGATCGCGATCGGCTGCCTCGG GATCGCGGTGATTCTCGTGTGCGCGCTCGGCCGCCTGTCGTCGAGTGTCGACGGGCTGATCTACGACCGGCTGCTGATGC TGCGCAGCCTGCCGCTGTCGCCCGACGTGGTCGTCGTCGACATCGACAACCAGAGCGTATCCGCGCTCGGCCGCTGGCCG TGGCCGCGCGACGTGCATGCGCGGCTGCTCGATACGCTGGCGCGCGCGCAGCCGGCCGCGGTCGTCTACGACGTGCTGTT TACCGAACCGTCGCCGGAGGATCGCGCGTTCGCGGACGCGATGAGTCGCGTGCCGACCTTCCTGCCCGTGCTGTTGAGCC CCGAGCAGGCGGACGGCACGCGCTCCGTCGATCCGCCGGTCGCCGCGCTCGCCGCGCGCGCGACGGGGCTGGGCCATATC AATCTCGAAGTCGATCGCGACGGCATCGTGCGCAGCGTCGCGCTGTTCGAAAGCGACGGCCGCGTGCGCTGGCCGCAACT GATGGTGCCCGTCTATCGCGCGATCCAGGCCGGCCGGCTGCACCCGGTCGGCGGCATGCCCGGCGCGGACGCGCACGACC TGTCGCGTGATGCGGCGGGCGATGGCCGCTACCTGATTCCGTTCAGCCGCAATACGCCCGCGTATCCGACGCTGTCGTTC GACGACGTGCTCGAAGGGCGCGTGAAGCCCGACGCGCTGCGCGGCAAGATCGTCGTCGTCGGCGTGACGGCGTCCGGGCT GTACGATCGCTTCGCGACGCCGGTGTCCGGCGAGTTCGGCCCGCTCGCCGGCGTGTATATCCATGCCAACGTGCTCGACA TGCTGGCGACCGGCAGTGCGATCTCGCCCGCGTCGCGTGCGGGGTTGTTCGTCGCGTCGCTGCTGCCGCTCGCCGTGTTG CTGGGCGGCTTCCTGATGCTGTCGCCGTGGCGTGCGTTGCTGCTGACGCTGAGCCTGGCCGCGCTCGCCGTCGTCGCGAG CCTGGCGCTGCTGTTCGAGGCGCGCATCTGGCTGACGCCGGCGCCCGCGATCTTCGGGCTGATCGCCGTCTATCCGATCT GGAACTGGCGGCGGCTGGAAATGACGATGTCGTACCTGCGCCGCGAGCTGCAGAAGCTCGCCGACGAGCCGCACCTGCTG CCGGAGGCGCCGCGCACGCGCAGCGTCGGCGGCGACGTGCTGGAGCGGCAGATGGCGCTGATGGCGCAGGCCGCGCAGCG TGTGCAGGACATGAAGCGCTTCGTGTGGGACAGCCTCGACAGCATGCCCGAGCCGATCTTCGTGACCGACCTCGCCGGCA CCGTGCTGATCGCCAACCATGCGGCGAAACGCTACGGGTCGCGGCTCGCGCTGCCGCTGCCGGAAGGGCGGCCGCTGCGC ACCGCGCTCGGCGAGCTGACCTTCATGAAGACCGTCGACGGCAACGCCGAGCATGACGCGGCGATCCGCGAGCACTGGCC GGCCGTGCTCGATCCGACGCTCGAGGCCGAGCACGACGCGATGGCGCGCGGCATCGAGGTGCGCGATCGCGACGGGCTCG ACCATCTGCTACGCTACGCGGCATGTACGAACGCGCAAGGGCGCGTGACCGGCTGGATTGCCGGCCTCGTCGACGTGACC GAGCTGCACGCGGCCGAGCGGCAGCGCGAGGAAGCGCTGCACCTGCTGTCGCACGACATGCGTTCGCCGCAGTCGTCGAT CCTCGCGCTGGTCGAGATCGAGCGCGATCGCGTCGAAAGCGACGCGATGCGCGGGCTGCTCGCGCGAATCGAGCGCTATG CGCACCGCGCGCTGTCGCTCGCCGACGAGTTCGTGCAACTGGCGCGCGCCGAGTCGCAGGCGTACCAGCTCGAGGTGACG AGCCTCGTCGACGTGCTGATCGACGCGAGCGACGAGGTGTGGCCGCAGGCGCAGGCGAAGCACATTCGCGTGGAGACCGG CGTGGGCACCGACATGTGCTGGGTGCGCGCGGACCGCTCGCTGATCACGCGCGCCTTCGTGAACCTGCTGAACAATGCGG TCAAATACAGTCCGTCCGACACGGTGATCACGTGTACGCTGACGGTCGAGCACGCATCGAAGCGGATGTTCTGTACGATT CGCGATCAGGGGTACGGCATTGCGCCGGAAGATCAGCGGCATCTGTTCGAGCGTTTCAAGCGATTCCATGCCGGCGAGCG GCCCGAAATCTCGGGTTCCGGGCTCGGCATGGCGTTCGTGAAGACGGTCGTCACGCGCCATGGGGGCAGCGTGTCGGTCG ACAGCGAAGTGGGTGTCGGCACCGCGGTGACGGTGTCGCTGCCCGCGATCGACGAGCCGTCCGCCTGA
Upstream 100 bases:
>100_bases TATTTCTGGGCCGTGACCGTCGAGGAATTCGAAGGCGGCAAGTTCTACGAGAAGACCAGTCCGGTCAGCGCGTTCACGTT GTCGCGCTGATCCGCGGCGC
Downstream 100 bases:
>100_bases CAGGGCCGGGCGCGACGGCAGGCATTTGGGGAAAGTCATGAGAAAGCAATGGGCAGCGACCGCGCTGGCGGCGTCGCTGT TGACGGGTTGCGCCGGCGTG
Product: periplasmic sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MKPDSVSPRRHLGRRFLIEWIAIGCLGIAVILVCALGRLSSSVDGLIYDRLLMLRSLPLSPDVVVVDIDNQSVSALGRWP WPRDVHARLLDTLARAQPAAVVYDVLFTEPSPEDRAFADAMSRVPTFLPVLLSPEQADGTRSVDPPVAALAARATGLGHI NLEVDRDGIVRSVALFESDGRVRWPQLMVPVYRAIQAGRLHPVGGMPGADAHDLSRDAAGDGRYLIPFSRNTPAYPTLSF DDVLEGRVKPDALRGKIVVVGVTASGLYDRFATPVSGEFGPLAGVYIHANVLDMLATGSAISPASRAGLFVASLLPLAVL LGGFLMLSPWRALLLTLSLAALAVVASLALLFEARIWLTPAPAIFGLIAVYPIWNWRRLEMTMSYLRRELQKLADEPHLL PEAPRTRSVGGDVLERQMALMAQAAQRVQDMKRFVWDSLDSMPEPIFVTDLAGTVLIANHAAKRYGSRLALPLPEGRPLR TALGELTFMKTVDGNAEHDAAIREHWPAVLDPTLEAEHDAMARGIEVRDRDGLDHLLRYAACTNAQGRVTGWIAGLVDVT ELHAAERQREEALHLLSHDMRSPQSSILALVEIERDRVESDAMRGLLARIERYAHRALSLADEFVQLARAESQAYQLEVT SLVDVLIDASDEVWPQAQAKHIRVETGVGTDMCWVRADRSLITRAFVNLLNNAVKYSPSDTVITCTLTVEHASKRMFCTI RDQGYGIAPEDQRHLFERFKRFHAGERPEISGSGLGMAFVKTVVTRHGGSVSVDSEVGVGTAVTVSLPAIDEPSA
Sequences:
>Translated_795_residues MKPDSVSPRRHLGRRFLIEWIAIGCLGIAVILVCALGRLSSSVDGLIYDRLLMLRSLPLSPDVVVVDIDNQSVSALGRWP WPRDVHARLLDTLARAQPAAVVYDVLFTEPSPEDRAFADAMSRVPTFLPVLLSPEQADGTRSVDPPVAALAARATGLGHI NLEVDRDGIVRSVALFESDGRVRWPQLMVPVYRAIQAGRLHPVGGMPGADAHDLSRDAAGDGRYLIPFSRNTPAYPTLSF DDVLEGRVKPDALRGKIVVVGVTASGLYDRFATPVSGEFGPLAGVYIHANVLDMLATGSAISPASRAGLFVASLLPLAVL LGGFLMLSPWRALLLTLSLAALAVVASLALLFEARIWLTPAPAIFGLIAVYPIWNWRRLEMTMSYLRRELQKLADEPHLL PEAPRTRSVGGDVLERQMALMAQAAQRVQDMKRFVWDSLDSMPEPIFVTDLAGTVLIANHAAKRYGSRLALPLPEGRPLR TALGELTFMKTVDGNAEHDAAIREHWPAVLDPTLEAEHDAMARGIEVRDRDGLDHLLRYAACTNAQGRVTGWIAGLVDVT ELHAAERQREEALHLLSHDMRSPQSSILALVEIERDRVESDAMRGLLARIERYAHRALSLADEFVQLARAESQAYQLEVT SLVDVLIDASDEVWPQAQAKHIRVETGVGTDMCWVRADRSLITRAFVNLLNNAVKYSPSDTVITCTLTVEHASKRMFCTI RDQGYGIAPEDQRHLFERFKRFHAGERPEISGSGLGMAFVKTVVTRHGGSVSVDSEVGVGTAVTVSLPAIDEPSA >Mature_795_residues MKPDSVSPRRHLGRRFLIEWIAIGCLGIAVILVCALGRLSSSVDGLIYDRLLMLRSLPLSPDVVVVDIDNQSVSALGRWP WPRDVHARLLDTLARAQPAAVVYDVLFTEPSPEDRAFADAMSRVPTFLPVLLSPEQADGTRSVDPPVAALAARATGLGHI NLEVDRDGIVRSVALFESDGRVRWPQLMVPVYRAIQAGRLHPVGGMPGADAHDLSRDAAGDGRYLIPFSRNTPAYPTLSF DDVLEGRVKPDALRGKIVVVGVTASGLYDRFATPVSGEFGPLAGVYIHANVLDMLATGSAISPASRAGLFVASLLPLAVL LGGFLMLSPWRALLLTLSLAALAVVASLALLFEARIWLTPAPAIFGLIAVYPIWNWRRLEMTMSYLRRELQKLADEPHLL PEAPRTRSVGGDVLERQMALMAQAAQRVQDMKRFVWDSLDSMPEPIFVTDLAGTVLIANHAAKRYGSRLALPLPEGRPLR TALGELTFMKTVDGNAEHDAAIREHWPAVLDPTLEAEHDAMARGIEVRDRDGLDHLLRYAACTNAQGRVTGWIAGLVDVT ELHAAERQREEALHLLSHDMRSPQSSILALVEIERDRVESDAMRGLLARIERYAHRALSLADEFVQLARAESQAYQLEVT SLVDVLIDASDEVWPQAQAKHIRVETGVGTDMCWVRADRSLITRAFVNLLNNAVKYSPSDTVITCTLTVEHASKRMFCTI RDQGYGIAPEDQRHLFERFKRFHAGERPEISGSGLGMAFVKTVVTRHGGSVSVDSEVGVGTAVTVSLPAIDEPSA
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: COG4252
COG function: function code T; Predicted transmembrane sensor domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788713, Length=387, Percent_Identity=26.6149870801034, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786783, Length=222, Percent_Identity=29.2792792792793, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1786600, Length=238, Percent_Identity=26.890756302521, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1786912, Length=237, Percent_Identity=25.3164556962025, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI1788549, Length=297, Percent_Identity=24.2424242424242, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI145693157, Length=227, Percent_Identity=22.0264317180617, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1790436, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787894, Length=244, Percent_Identity=27.8688524590164, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1789149, Length=225, Percent_Identity=24, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1788393, Length=235, Percent_Identity=24.2553191489362, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1789808, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1790346, Length=239, Percent_Identity=25.1046025104602, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 86946; Mature: 86946
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPDSVSPRRHLGRRFLIEWIAIGCLGIAVILVCALGRLSSSVDGLIYDRLLMLRSLPLS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PDVVVVDIDNQSVSALGRWPWPRDVHARLLDTLARAQPAAVVYDVLFTEPSPEDRAFADA CCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHEEHHHCCCCCCCHHHHHHH MSRVPTFLPVLLSPEQADGTRSVDPPVAALAARATGLGHINLEVDRDGIVRSVALFESDG HHHCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHEEECCC RVRWPQLMVPVYRAIQAGRLHPVGGMPGADAHDLSRDAAGDGRYLIPFSRNTPAYPTLSF CEECHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCH DDVLEGRVKPDALRGKIVVVGVTASGLYDRFATPVSGEFGPLAGVYIHANVLDMLATGSA HHHHCCCCCCHHHCCEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCC ISPASRAGLFVASLLPLAVLLGGFLMLSPWRALLLTLSLAALAVVASLALLFEARIWLTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC APAIFGLIAVYPIWNWRRLEMTMSYLRRELQKLADEPHLLPEAPRTRSVGGDVLERQMAL CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH MAQAAQRVQDMKRFVWDSLDSMPEPIFVTDLAGTVLIANHAAKRYGSRLALPLPEGRPLR HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHEEHHHHHHHHCCEEEEECCCCCCHH TALGELTFMKTVDGNAEHDAAIREHWPAVLDPTLEAEHDAMARGIEVRDRDGLDHLLRYA HHHHHHHEEEECCCCCCCCHHHHHCCCHHCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH ACTNAQGRVTGWIAGLVDVTELHAAERQREEALHLLSHDMRSPQSSILALVEIERDRVES HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHHHHH DAMRGLLARIERYAHRALSLADEFVQLARAESQAYQLEVTSLVDVLIDASDEVWPQAQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCCCCCCCCC HIRVETGVGTDMCWVRADRSLITRAFVNLLNNAVKYSPSDTVITCTLTVEHASKRMFCTI EEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECCCCEEEEEE RDQGYGIAPEDQRHLFERFKRFHAGERPEISGSGLGMAFVKTVVTRHGGSVSVDSEVGVG ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC TAVTVSLPAIDEPSA EEEEEEECCCCCCCC >Mature Secondary Structure MKPDSVSPRRHLGRRFLIEWIAIGCLGIAVILVCALGRLSSSVDGLIYDRLLMLRSLPLS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PDVVVVDIDNQSVSALGRWPWPRDVHARLLDTLARAQPAAVVYDVLFTEPSPEDRAFADA CCEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHEEHHHCCCCCCCHHHHHHH MSRVPTFLPVLLSPEQADGTRSVDPPVAALAARATGLGHINLEVDRDGIVRSVALFESDG HHHCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHEEECCC RVRWPQLMVPVYRAIQAGRLHPVGGMPGADAHDLSRDAAGDGRYLIPFSRNTPAYPTLSF CEECHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCCH DDVLEGRVKPDALRGKIVVVGVTASGLYDRFATPVSGEFGPLAGVYIHANVLDMLATGSA HHHHCCCCCCHHHCCEEEEEEECCHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHCCCC ISPASRAGLFVASLLPLAVLLGGFLMLSPWRALLLTLSLAALAVVASLALLFEARIWLTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC APAIFGLIAVYPIWNWRRLEMTMSYLRRELQKLADEPHLLPEAPRTRSVGGDVLERQMAL CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH MAQAAQRVQDMKRFVWDSLDSMPEPIFVTDLAGTVLIANHAAKRYGSRLALPLPEGRPLR HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHEEHHHHHHHHCCEEEEECCCCCCHH TALGELTFMKTVDGNAEHDAAIREHWPAVLDPTLEAEHDAMARGIEVRDRDGLDHLLRYA HHHHHHHEEEECCCCCCCCHHHHHCCCHHCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH ACTNAQGRVTGWIAGLVDVTELHAAERQREEALHLLSHDMRSPQSSILALVEIERDRVES HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEEEHHHHHHH DAMRGLLARIERYAHRALSLADEFVQLARAESQAYQLEVTSLVDVLIDASDEVWPQAQAK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCCCCCCCCC HIRVETGVGTDMCWVRADRSLITRAFVNLLNNAVKYSPSDTVITCTLTVEHASKRMFCTI EEEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHEECCCCCEEEEEEEEECCCCEEEEEE RDQGYGIAPEDQRHLFERFKRFHAGERPEISGSGLGMAFVKTVVTRHGGSVSVDSEVGVG ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCC TAVTVSLPAIDEPSA EEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]