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The map label for this gene is ydaM [H]

Identifier: 116689355

GI number: 116689355

Start: 1468815

End: 1470377

Strand: Reverse

Name: ydaM [H]

Synonym: Bcen2424_1333

Alternate gene names: 116689355

Gene position: 1470377-1468815 (Counterclockwise)

Preceding gene: 116689365

Following gene: 116689354

Centisome position: 42.2

GC content: 67.75

Gene sequence:

>1563_bases
ATGACGAAAACGCGGGCGGCGTCACTCTGCGAGCAAGGCATCCTGCTGCTGATCGTGCTGGCCTGCTCGCTGGTCGTGCG
CGACACCGGATCGCGGGCGATCGCCGAACCGGCCCGCTTCAGCGTGCCCGCCGCCAACATCACGACTGCCGCGAACCTCG
CGATCGCGATGGAGCGCACCGCGCTCGACAGCGTGACGCTTTCGCTCGCCGCACAGGCCGCGACCGACACGGACGCGTCG
CTCGAACCGCCGCCCGCCACCACGGCGGGCATCACGTTCGATCCCGAGCTGCTGCTGATGCCGTGCGTGGCGTACCTGTG
GCTGTTCACGCTGCTGACGTGCGCGTATGCCGCGCGGCATTACGTATTCAGCCTCGATCGCCTGTTCAAGCCGCAGCACG
CGCCTTACCGGACGATGACCCACGGCGATTGGCCGCGGCTCACGGTATTCGTCGCCGCCCACAACGAGGAAACGGTCATC
GTCGATTGCCTGATGGCGCTGCTGGCCACGACCTACCCGCGCGACCGGCTCACGATCATCCCGGTCAACGACCGCTCGAC
CGACAACACGCGCGCGTTGATCGACGAGGTCCGGGCACTCGCGCCCGAGCTGATCCAGCCGTTTCACCGCGAAACCGGCA
AGCCGGGCAAGGCAGCCGCGCTGAAGGATGCGCTGCGGTTCATCCGCGGCGACATCATGGTGGTATTCGACGCCGACTAC
CTGCCTCGACCGGGGCTGCTGAAGGAACTCGTCGCGCCGTTCTTCGATCCGGAAGTCGGCGCGGTGATGGGCCGTGTCGT
GCCGCAGAACGCCGACAGCAACCTGCTCGCGCGGCTGCTCGATCTCGAGCGCGCGGGCGGCTATCAGGTCAACCAGCAAG
CCCGCAACAATCTCGACCTGGTGCCGCAGTACGGCGGCACGGTCGGCGGCATCCGCAAGGGTGCGCTCGACGCCGTGGGC
GGCTGGTGCGACGACACGCTCGCCGAAGATACCGACATGACCTACCGCCTGCTGCTGAGCGACTGGCGCACGGTCTATCT
GAACCACGCCGAATGTTATGAGGAAGTGCCGGAGCGCTGGGCCGTCCGCGCCCGGCAACTGACCCGCTGGGCGAAGGGCC
ACAACCAGACGATGCTGCGCTATCTGGTGCCGGTGCTGCGCAATCCGCTGATCTCGCGGCGCTGCCGGCTCGACGGCGCA
CTGCTGCTCGGCGTATTCACGATGCCGGCGCTGCTCGCGATCGCGTGGAGCGCCGCGCTCGCGCTCTACCTGTTCAACGG
CGTCAACTCGACCGCGCTCGGCCTGCTCCTGTCGCTGTTCGCGCTGTTCTCGTTCAGCACCTTCGGCAACTTCGGCGTGT
TCTTCGAGATCGTCGTCGCCGCGCGGCTCGACGGCCGCGCGACGCGCCTGCGGCTCGTGCCGGTCAACGTCGTCGGCTTT
TGCGTGACGATCGCGGCGGTCGTCTCCGCGCTCTGGGGGCTCGCGCTCGACGCCGCGTTTCGCCGCGAACTGAAATGGGA
CAAGACCGAGCGTTTTCGCCGGCAGTTGAAACCGGAGCGATGA

Upstream 100 bases:

>100_bases
CTGTGCGACGAACGCGTCACCGCCTTCCATTGACATCCGCGCGATCCACGGAGCGCCTTCAGCTCTCATCGGTCGTCGTC
GCGGGCACGGGGACCAGGAC

Downstream 100 bases:

>100_bases
GCGATGACGACCTTCAATGTGATGGTGCCGGTGGCCAGCGTACTCGCCCTGCCGTTCCTGCCGATGCTGCATGAACTGAT
CCGGCGCAGCGACGTCGCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MTKTRAASLCEQGILLLIVLACSLVVRDTGSRAIAEPARFSVPAANITTAANLAIAMERTALDSVTLSLAAQAATDTDAS
LEPPPATTAGITFDPELLLMPCVAYLWLFTLLTCAYAARHYVFSLDRLFKPQHAPYRTMTHGDWPRLTVFVAAHNEETVI
VDCLMALLATTYPRDRLTIIPVNDRSTDNTRALIDEVRALAPELIQPFHRETGKPGKAAALKDALRFIRGDIMVVFDADY
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADSNLLARLLDLERAGGYQVNQQARNNLDLVPQYGGTVGGIRKGALDAVG
GWCDDTLAEDTDMTYRLLLSDWRTVYLNHAECYEEVPERWAVRARQLTRWAKGHNQTMLRYLVPVLRNPLISRRCRLDGA
LLLGVFTMPALLAIAWSAALALYLFNGVNSTALGLLLSLFALFSFSTFGNFGVFFEIVVAARLDGRATRLRLVPVNVVGF
CVTIAAVVSALWGLALDAAFRRELKWDKTERFRRQLKPER

Sequences:

>Translated_520_residues
MTKTRAASLCEQGILLLIVLACSLVVRDTGSRAIAEPARFSVPAANITTAANLAIAMERTALDSVTLSLAAQAATDTDAS
LEPPPATTAGITFDPELLLMPCVAYLWLFTLLTCAYAARHYVFSLDRLFKPQHAPYRTMTHGDWPRLTVFVAAHNEETVI
VDCLMALLATTYPRDRLTIIPVNDRSTDNTRALIDEVRALAPELIQPFHRETGKPGKAAALKDALRFIRGDIMVVFDADY
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADSNLLARLLDLERAGGYQVNQQARNNLDLVPQYGGTVGGIRKGALDAVG
GWCDDTLAEDTDMTYRLLLSDWRTVYLNHAECYEEVPERWAVRARQLTRWAKGHNQTMLRYLVPVLRNPLISRRCRLDGA
LLLGVFTMPALLAIAWSAALALYLFNGVNSTALGLLLSLFALFSFSTFGNFGVFFEIVVAARLDGRATRLRLVPVNVVGF
CVTIAAVVSALWGLALDAAFRRELKWDKTERFRRQLKPER
>Mature_519_residues
TKTRAASLCEQGILLLIVLACSLVVRDTGSRAIAEPARFSVPAANITTAANLAIAMERTALDSVTLSLAAQAATDTDASL
EPPPATTAGITFDPELLLMPCVAYLWLFTLLTCAYAARHYVFSLDRLFKPQHAPYRTMTHGDWPRLTVFVAAHNEETVIV
DCLMALLATTYPRDRLTIIPVNDRSTDNTRALIDEVRALAPELIQPFHRETGKPGKAAALKDALRFIRGDIMVVFDADYL
PRPGLLKELVAPFFDPEVGAVMGRVVPQNADSNLLARLLDLERAGGYQVNQQARNNLDLVPQYGGTVGGIRKGALDAVGG
WCDDTLAEDTDMTYRLLLSDWRTVYLNHAECYEEVPERWAVRARQLTRWAKGHNQTMLRYLVPVLRNPLISRRCRLDGAL
LLGVFTMPALLAIAWSAALALYLFNGVNSTALGLLLSLFALFSFSTFGNFGVFFEIVVAARLDGRATRLRLVPVNVVGFC
VTIAAVVSALWGLALDAAFRRELKWDKTERFRRQLKPER

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=280, Percent_Identity=28.2142857142857, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI87082284, Length=313, Percent_Identity=24.6006389776358, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 57460; Mature: 57329

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTRAASLCEQGILLLIVLACSLVVRDTGSRAIAEPARFSVPAANITTAANLAIAMERT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ALDSVTLSLAAQAATDTDASLEPPPATTAGITFDPELLLMPCVAYLWLFTLLTCAYAARH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YVFSLDRLFKPQHAPYRTMTHGDWPRLTVFVAAHNEETVIVDCLMALLATTYPRDRLTII
HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE
PVNDRSTDNTRALIDEVRALAPELIQPFHRETGKPGKAAALKDALRFIRGDIMVVFDADY
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCC
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADSNLLARLLDLERAGGYQVNQQARNNLDL
CCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECHHHCCCCCC
VPQYGGTVGGIRKGALDAVGGWCDDTLAEDTDMTYRLLLSDWRTVYLNHAECYEEVPERW
CCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHEEECHHHHHHHHHHHH
AVRARQLTRWAKGHNQTMLRYLVPVLRNPLISRRCRLDGALLLGVFTMPALLAIAWSAAL
HHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ALYLFNGVNSTALGLLLSLFALFSFSTFGNFGVFFEIVVAARLDGRATRLRLVPVNVVGF
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHH
CVTIAAVVSALWGLALDAAFRRELKWDKTERFRRQLKPER
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
>Mature Secondary Structure 
TKTRAASLCEQGILLLIVLACSLVVRDTGSRAIAEPARFSVPAANITTAANLAIAMERT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
ALDSVTLSLAAQAATDTDASLEPPPATTAGITFDPELLLMPCVAYLWLFTLLTCAYAARH
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YVFSLDRLFKPQHAPYRTMTHGDWPRLTVFVAAHNEETVIVDCLMALLATTYPRDRLTII
HHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEE
PVNDRSTDNTRALIDEVRALAPELIQPFHRETGKPGKAAALKDALRFIRGDIMVVFDADY
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCC
LPRPGLLKELVAPFFDPEVGAVMGRVVPQNADSNLLARLLDLERAGGYQVNQQARNNLDL
CCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEECHHHCCCCCC
VPQYGGTVGGIRKGALDAVGGWCDDTLAEDTDMTYRLLLSDWRTVYLNHAECYEEVPERW
CCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHEEECHHHHHHHHHHHH
AVRARQLTRWAKGHNQTMLRYLVPVLRNPLISRRCRLDGALLLGVFTMPALLAIAWSAAL
HHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ALYLFNGVNSTALGLLLSLFALFSFSTFGNFGVFFEIVVAARLDGRATRLRLVPVNVVGF
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHH
CVTIAAVVSALWGLALDAAFRRELKWDKTERFRRQLKPER
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]