Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689365
Identifier: 116689365
GI number: 116689365
Start: 1481268
End: 1481876
Strand: Reverse
Name: 116689365
Synonym: Bcen2424_1343
Alternate gene names: NA
Gene position: 1481876-1481268 (Counterclockwise)
Preceding gene: 116689368
Following gene: 116689355
Centisome position: 42.53
GC content: 66.34
Gene sequence:
>609_bases ATGGCAAGATGCGGTTCATTCCGCAGCCTTCGCCGATTCGACATGTCCCTGCCGCACGCGCTTCTCACCGCCCTCGCCGA ACGCCCGGGTTCGGGGTCCGAGCTCGCCGACCGTTTCGATCGCTCGATCGGCTATTTCTGGCAGGCGACGCACCAGCAGA TCTATCGCGAACTCGGGCGTCTCGAGGAAATGGGCTGGATCGAATCGCTGCCCGCCGAGTCCGGCCGCGGCCGCAAGCGT GCGTATCGAATCCTGCCGGCCGGCAAGAAGGAATTGCGCCGCTGGATCGCCGAACCGGAAGATCCGACACCGCTGCGCGA AGCGTTGATGGTGCGCCTGCGTGCGGAAGCCGTGCTCGGGCCGGCCGGCCTCGAGGACGAGATCCGGCGGCGCATCGCGC TGCATCAGGAAAAGCTGGACTTGTATCTGCAGATCGAGGCGCGTGACTTTGTGGCGCCCGGCGATACGGCGACCGGCGAC CCGGCGGCCGGCGATTCACGCACGAAGCGCCTGCAGCATCTGGTGCTGCAGGCCGGCATCGCGAACGAGCGATTCTGGGT CGAGTTCTCGCAGCATGCGCTCGACACGCTGCGTCTGCCGAAGGATTGA
Upstream 100 bases:
>100_bases CCATGTTTATGCAACAAGTTGCATTGATGGTAGCTCGTCGGCTTTGTTTGTGCAACATGTTGCATAAAAGCACCCGCGTC GTTTGTGCTGCGGCCCCGAT
Downstream 100 bases:
>100_bases AGCGGCTGACGAAGAACGCACGTTGTCCGTTTCACCGCCGGTCGACATTGCGCGCCGGTGTAGCGGATCGCCACGCTCTA CAGCAGCTCGCGCGCCGCGC
Product: PadR-like family transcriptional regulator
Products: NA
Alternate protein names: PadR-Like Family Transcriptional Regulator; PadR Family Transcriptional Regulator; Transcriptional Regulator PadR-Like Family; Transcriptional Regulator PadR Family Protein; Transcriptional Regulatory Protein; Transcriptional Repressor PadR; Transcriptional Regulator PadR-Like Protein; Padr Family Transcriptional Regulator; Regulator Of Phenolic Acid Metabolism PadR; Transcription Regulator Padr-Like; PadR Family Regulatory Protein; Transcriptional Regulator PadR Family; Regulatory Protein; Transcriptional Repressor
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MARCGSFRSLRRFDMSLPHALLTALAERPGSGSELADRFDRSIGYFWQATHQQIYRELGRLEEMGWIESLPAESGRGRKR AYRILPAGKKELRRWIAEPEDPTPLREALMVRLRAEAVLGPAGLEDEIRRRIALHQEKLDLYLQIEARDFVAPGDTATGD PAAGDSRTKRLQHLVLQAGIANERFWVEFSQHALDTLRLPKD
Sequences:
>Translated_202_residues MARCGSFRSLRRFDMSLPHALLTALAERPGSGSELADRFDRSIGYFWQATHQQIYRELGRLEEMGWIESLPAESGRGRKR AYRILPAGKKELRRWIAEPEDPTPLREALMVRLRAEAVLGPAGLEDEIRRRIALHQEKLDLYLQIEARDFVAPGDTATGD PAAGDSRTKRLQHLVLQAGIANERFWVEFSQHALDTLRLPKD >Mature_201_residues ARCGSFRSLRRFDMSLPHALLTALAERPGSGSELADRFDRSIGYFWQATHQQIYRELGRLEEMGWIESLPAESGRGRKRA YRILPAGKKELRRWIAEPEDPTPLREALMVRLRAEAVLGPAGLEDEIRRRIALHQEKLDLYLQIEARDFVAPGDTATGDP AAGDSRTKRLQHLVLQAGIANERFWVEFSQHALDTLRLPKD
Specific function: Unknown
COG id: COG1695
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23028; Mature: 22896
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARCGSFRSLRRFDMSLPHALLTALAERPGSGSELADRFDRSIGYFWQATHQQIYRELGR CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEEMGWIESLPAESGRGRKRAYRILPAGKKELRRWIAEPEDPTPLREALMVRLRAEAVLG HHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC PAGLEDEIRRRIALHQEKLDLYLQIEARDFVAPGDTATGDPAAGDSRTKRLQHLVLQAGI CCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC ANERFWVEFSQHALDTLRLPKD CCCHHEEHHHHHHHHHHCCCCC >Mature Secondary Structure ARCGSFRSLRRFDMSLPHALLTALAERPGSGSELADRFDRSIGYFWQATHQQIYRELGR CCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEEMGWIESLPAESGRGRKRAYRILPAGKKELRRWIAEPEDPTPLREALMVRLRAEAVLG HHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC PAGLEDEIRRRIALHQEKLDLYLQIEARDFVAPGDTATGDPAAGDSRTKRLQHLVLQAGI CCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC ANERFWVEFSQHALDTLRLPKD CCCHHEEHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA