Click here to switch to the map view.

The map label for this gene is 116689300

Identifier: 116689300

GI number: 116689300

Start: 1407564

End: 1408745

Strand: Reverse

Name: 116689300

Synonym: Bcen2424_1278

Alternate gene names: NA

Gene position: 1408745-1407564 (Counterclockwise)

Preceding gene: 116689303

Following gene: 116689288

Centisome position: 40.44

GC content: 71.32

Gene sequence:

>1182_bases
ATGCGCGCATGGCGCGCGGCGACGCGATACGCGTTCGACGCATGGCCCGCGGCGTCGCTGCCGCACGCCGCGTCATCGTG
CTACGACGACCTGTTCGAACCGCTGCTCGGCCCGCAGGCCGCGCCGCCAGGCTTCGACCTCGCGTGGCCCGCCGTCAGCG
AGCAGATCGTCGCGCACACGCCGTTTTGCGACTTGCGGCGCTTCGCGCACGCCGATGCGCACCGCACGGTGCTGCTGTGC
GCGCCGCTCGTCGGGCATGCGGCCGTGATGATGCGGGAAACCGCCGAAACGCTGCTCGCCGATGGCGACGTCTGCGTGAC
CGACTGGCGCAATGCGCGCGACGTGCCGCTTGCGGCAGGCCGTTTCGGGCTCGACGAATACGTCGCGATGCTCGACGGTT
TCGTCAGCACCCTCCAGCACGACGAGCGGCCGCTGCACGTCGTCGCCGTATGCCAGGCGACCGTACCGGCGCTCGGCGCC
CTGGCGCTGCGCGCCGCGCGCGGCCTCGCGCCGCCCGCGAGTATCACGCTGATCGGCGGCCCGATCGATGCCCGCCTGAA
CCCGAGCGCGCTCGGCGCCGCGGCCGCCGCCCATTCGCTCGACTGGTGCCGGCGCCACTTGATCGACATCGTGCCGCCCG
GCTTCGCCGGGCATGGCCGCCACGTGTTCCCGACCTATCTGCAACAGGGCGAGATCGCGCTCCTGTATCCGCAACGCTTC
CTGACGCTGATCGAGACCTACGCGCTGGCAGCTTCCCGCTTCGACATGACCGGGCTCGCCGACGCCCGGCGGGCACTGCG
CGAATACACGGCGCTGCTCGACATGCCGGCCGACTATTTCCTCGACACGGTCGACGTCGTGTTTCAGCGCATGCTGCTCG
CGACCGGCGCGTGGCATGTGGACGGCCGGCGCGTCGAACCGGCCGCGCTGCGCGATGTCGCGCTGCTGACCGTCGAAGGT
GCCTGCGACAGGGTCACGGGCGCCGGGCAGACGCATGCGGCGCTCGATCTGTGCAGCGGCCTCTCGGCCGACGAGCGCCA
TCGCATCGACGTCGACGATTGCGATCACTACGGGCTGTTTACGGGGCCACGCTGGCACGGCAACGTCCATCCGGCGCTGC
AGCGCGTGTTCGCGCTCGCGGAAGCCGGCCGACCACGCCCGCGCCGAAACCGGCAAACCTGA

Upstream 100 bases:

>100_bases
CTCCCGCTGCCCGGCCGCTATGACCATAATGGAGGTTCACGCTCCTTCCGCCCCAGGGTCCGCCATGTGGTATGCCGTCG
TCGAGCAGCAGCGGGAATGG

Downstream 100 bases:

>100_bases
CGCCGCGTCACGGGCGCGCGGCGTCGAGCAGCGCGCGCACCTCGTCGTCGCTCGTCTGCTCGAAGCGCGCGTAGAACTGG
CTGATCCCGAAGAACCGCGC

Product: PHB de-polymerase domain-containing protein

Products: NA

Alternate protein names: Intracellular PHB Depolymerase; Polyhydroxyalkanoate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase; PHB Depolymerase; Intracellular Poly(3-Hydroxybutyrate) Depolymerase; Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Intracellular Polyhydroxyalkanoate Depolymerase; Polyhydroxyalkanoate Depolymerase Intracellular Subfamily; Poly(3-Hydroxyalkanoate) Depolymerase; PHB De-Polymerase Domain-Containing Protein; Poly(3-Hydroxybutyrate) Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase Protein; Poly[D(-)-3-Hydroxyalkanoate] Depolymerase; Polyhydroxybutanoate Depolymerase; Intracellular PHB Depolymerase Protein; Poly-Beta-Hydroxybutyrate Depolymerase; Poly-Beta-Hydroxyalkanoate Depolymerase-Like Protein; Intracellular Poly[D(-)-3-Hydroxybutyrate] Depolymerase; Poly[D(-)-3-Hydroxybutyrate](Phb) Depolymerase; Poly-Beta-Hydroxyalkanoate/Butyrate Depolymerase

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MRAWRAATRYAFDAWPAASLPHAASSCYDDLFEPLLGPQAAPPGFDLAWPAVSEQIVAHTPFCDLRRFAHADAHRTVLLC
APLVGHAAVMMRETAETLLADGDVCVTDWRNARDVPLAAGRFGLDEYVAMLDGFVSTLQHDERPLHVVAVCQATVPALGA
LALRAARGLAPPASITLIGGPIDARLNPSALGAAAAAHSLDWCRRHLIDIVPPGFAGHGRHVFPTYLQQGEIALLYPQRF
LTLIETYALAASRFDMTGLADARRALREYTALLDMPADYFLDTVDVVFQRMLLATGAWHVDGRRVEPAALRDVALLTVEG
ACDRVTGAGQTHAALDLCSGLSADERHRIDVDDCDHYGLFTGPRWHGNVHPALQRVFALAEAGRPRPRRNRQT

Sequences:

>Translated_393_residues
MRAWRAATRYAFDAWPAASLPHAASSCYDDLFEPLLGPQAAPPGFDLAWPAVSEQIVAHTPFCDLRRFAHADAHRTVLLC
APLVGHAAVMMRETAETLLADGDVCVTDWRNARDVPLAAGRFGLDEYVAMLDGFVSTLQHDERPLHVVAVCQATVPALGA
LALRAARGLAPPASITLIGGPIDARLNPSALGAAAAAHSLDWCRRHLIDIVPPGFAGHGRHVFPTYLQQGEIALLYPQRF
LTLIETYALAASRFDMTGLADARRALREYTALLDMPADYFLDTVDVVFQRMLLATGAWHVDGRRVEPAALRDVALLTVEG
ACDRVTGAGQTHAALDLCSGLSADERHRIDVDDCDHYGLFTGPRWHGNVHPALQRVFALAEAGRPRPRRNRQT
>Mature_393_residues
MRAWRAATRYAFDAWPAASLPHAASSCYDDLFEPLLGPQAAPPGFDLAWPAVSEQIVAHTPFCDLRRFAHADAHRTVLLC
APLVGHAAVMMRETAETLLADGDVCVTDWRNARDVPLAAGRFGLDEYVAMLDGFVSTLQHDERPLHVVAVCQATVPALGA
LALRAARGLAPPASITLIGGPIDARLNPSALGAAAAAHSLDWCRRHLIDIVPPGFAGHGRHVFPTYLQQGEIALLYPQRF
LTLIETYALAASRFDMTGLADARRALREYTALLDMPADYFLDTVDVVFQRMLLATGAWHVDGRRVEPAALRDVALLTVEG
ACDRVTGAGQTHAALDLCSGLSADERHRIDVDDCDHYGLFTGPRWHGNVHPALQRVFALAEAGRPRPRRNRQT

Specific function: Unknown

COG id: COG4553

COG function: function code I; Poly-beta-hydroxyalkanoate depolymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.1.-

Molecular weight: Translated: 42762; Mature: 42762

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAWRAATRYAFDAWPAASLPHAASSCYDDLFEPLLGPQAAPPGFDLAWPAVSEQIVAHT
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
PFCDLRRFAHADAHRTVLLCAPLVGHAAVMMRETAETLLADGDVCVTDWRNARDVPLAAG
CHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
RFGLDEYVAMLDGFVSTLQHDERPLHVVAVCQATVPALGALALRAARGLAPPASITLIGG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
PIDARLNPSALGAAAAAHSLDWCRRHLIDIVPPGFAGHGRHVFPTYLQQGEIALLYPQRF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECHHHH
LTLIETYALAASRFDMTGLADARRALREYTALLDMPADYFLDTVDVVFQRMLLATGAWHV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEC
DGRRVEPAALRDVALLTVEGACDRVTGAGQTHAALDLCSGLSADERHRIDVDDCDHYGLF
CCCCCCHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
TGPRWHGNVHPALQRVFALAEAGRPRPRRNRQT
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRAWRAATRYAFDAWPAASLPHAASSCYDDLFEPLLGPQAAPPGFDLAWPAVSEQIVAHT
CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
PFCDLRRFAHADAHRTVLLCAPLVGHAAVMMRETAETLLADGDVCVTDWRNARDVPLAAG
CHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
RFGLDEYVAMLDGFVSTLQHDERPLHVVAVCQATVPALGALALRAARGLAPPASITLIGG
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
PIDARLNPSALGAAAAAHSLDWCRRHLIDIVPPGFAGHGRHVFPTYLQQGEIALLYPQRF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEECHHHH
LTLIETYALAASRFDMTGLADARRALREYTALLDMPADYFLDTVDVVFQRMLLATGAWHV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEC
DGRRVEPAALRDVALLTVEGACDRVTGAGQTHAALDLCSGLSADERHRIDVDDCDHYGLF
CCCCCCHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
TGPRWHGNVHPALQRVFALAEAGRPRPRRNRQT
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA