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The map label for this gene is pecT [H]

Identifier: 116689288

GI number: 116689288

Start: 1397529

End: 1398515

Strand: Reverse

Name: pecT [H]

Synonym: Bcen2424_1266

Alternate gene names: 116689288

Gene position: 1398515-1397529 (Counterclockwise)

Preceding gene: 116689300

Following gene: 116689287

Centisome position: 40.14

GC content: 69.81

Gene sequence:

>987_bases
ATGCAGCCGGCGGCGCGACACGGGCTACGCGTCTGGTGCCCCTCGTTGGCGGAGGCCGCACTGGCGCGTGATCCGATACT
AGCGCCGCATAATCCGGCCATTTATGAAGTTGTCGAAACCGATTCAGTGGATTTAGCAATGCGTCCGTTACCGCCCGAGC
TGCTGCGCAGCTTCGTCGCCGTCGCCCAGTCCGGCAGCTTCACCGCCGCGTCCGAGCGCGTGAACCTGTCGCAATCGACC
GTTAGCCAGCATATCCGCCGCCTCGAGGAGCTGCTCGACCGGCCGCTGTTCGAGCGCGACACGCGCAACGTGCACCTGTC
GCAGCACGGCGACGCGCTGTTCCGCTACGCGGTGCGCATCCTCGAACTGATGGACGAGGCCGTCACGTCGGTCTGCGGGC
CGCCGCTGTCGGGCAAGGTGCGGCTCGCGATGTCGGAGGATTTCGCGTCGGCGCACCTGACGGCCGCGCTCGCGAGCTTC
GTGCAGCGCAACCCGGACGTCGAGCTCGCGATCTCGACCGGGCTGTCGGGCGACCTGTTCGACGCGCTCGACGAAGGCCG
GCACGATCTCGTGTTCGCGAAACGCATCGCCGGCAGCCGGCGCGGCCGCGTGATCCGCAGCGAACCGCTGTACTGGTGCA
CCGGCCCCGATTCGCGGATCACCGGCCACGAGGCCGTGCTGCCGCTTGCAATGCATCCGGAGCCGAGCGTGTCGCGCCGC
CGCGTGCTCGAATCGCTCGAAGCCGTCGGGCGACCGTACCGGATCGCCGTCGTGAGCAGCAGCATCGCGGTGCTGCGGGC
GGCCGCGAGCGCGGGGCTCGGCGTCAGCGCGTTCGCCGGCTACGTGATCCCGGCCGGGCTCGCGCGGCTCGACGCGGGGC
TGCCGGAACTCGGCGAACTCGAATACGTGATCGATCGCCCGGCGGCCGCGTCCCGCTCCACGCTCGCGCTCGAAGCCACG
TTGATCACGGCGGCGGCCGAGTTGTAA

Upstream 100 bases:

>100_bases
GCGGGGCGCCGCGGCCCGGCGGCTCGTCGTGCGAGCACGTTCTCGGGGTCGATGGGATGATGCGGATTCGGGCCGGACGC
CGGATGGCTTAGACTGACCG

Downstream 100 bases:

>100_bases
CGGCACCGTGCTCAAGTCACGCGGGCACGCCCGCACCTGACAGCTTTGCCCGGAACGCGTCATCGTCCGCGCAGCACCCG
CTCGCGACAATGGGACCCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MQPAARHGLRVWCPSLAEAALARDPILAPHNPAIYEVVETDSVDLAMRPLPPELLRSFVAVAQSGSFTAASERVNLSQST
VSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASF
VQRNPDVELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHEAVLPLAMHPEPSVSRR
RVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAGLARLDAGLPELGELEYVIDRPAAASRSTLALEAT
LITAAAEL

Sequences:

>Translated_328_residues
MQPAARHGLRVWCPSLAEAALARDPILAPHNPAIYEVVETDSVDLAMRPLPPELLRSFVAVAQSGSFTAASERVNLSQST
VSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASF
VQRNPDVELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHEAVLPLAMHPEPSVSRR
RVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAGLARLDAGLPELGELEYVIDRPAAASRSTLALEAT
LITAAAEL
>Mature_328_residues
MQPAARHGLRVWCPSLAEAALARDPILAPHNPAIYEVVETDSVDLAMRPLPPELLRSFVAVAQSGSFTAASERVNLSQST
VSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASF
VQRNPDVELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHEAVLPLAMHPEPSVSRR
RVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAGLARLDAGLPELGELEYVIDRPAAASRSTLALEAT
LITAAAEL

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=32.6771653543307, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787806, Length=157, Percent_Identity=35.031847133758, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=33.5664335664336, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=31.9444444444444, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=29.9319727891156, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=28.2157676348548, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI157672245, Length=270, Percent_Identity=26.2962962962963, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787589, Length=190, Percent_Identity=29.4736842105263, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790262, Length=142, Percent_Identity=28.8732394366197, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35290; Mature: 35290

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPAARHGLRVWCPSLAEAALARDPILAPHNPAIYEVVETDSVDLAMRPLPPELLRSFVA
CCCCHHCCCEEECHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHHHHHH
VAQSGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRI
HHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH
LELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPDVELAISTGLSGDLF
HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
DALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHEAVLPLAMHPEPSVSRR
HHHHCCCHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCHHEEEEEECCCCCHHHH
RVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAGLARLDAGLPELGEL
HHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
EYVIDRPAAASRSTLALEATLITAAAEL
HHEECCCCCCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MQPAARHGLRVWCPSLAEAALARDPILAPHNPAIYEVVETDSVDLAMRPLPPELLRSFVA
CCCCHHCCCEEECHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCHHHHHHHHH
VAQSGSFTAASERVNLSQSTVSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRI
HHCCCCCEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHH
LELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPDVELAISTGLSGDLF
HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
DALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHEAVLPLAMHPEPSVSRR
HHHHCCCHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCHHEEEEEECCCCCHHHH
RVLESLEAVGRPYRIAVVSSSIAVLRAAASAGLGVSAFAGYVIPAGLARLDAGLPELGEL
HHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
EYVIDRPAAASRSTLALEATLITAAAEL
HHEECCCCCCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]