Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is proP [H]
Identifier: 116689303
GI number: 116689303
Start: 1410073
End: 1411563
Strand: Reverse
Name: proP [H]
Synonym: Bcen2424_1281
Alternate gene names: 116689303
Gene position: 1411563-1410073 (Counterclockwise)
Preceding gene: 116689304
Following gene: 116689300
Centisome position: 40.52
GC content: 68.08
Gene sequence:
>1491_bases ATGACCTTGACCGCAACACACGTCAGCCCGACCGCTGTCTCTTCCCCCGCTTCGTCGTCCGGCGAAGCCCCGCTCGCCGC GGACGACATCACCGTCGTCGACCAGAGCCTGCTCAAGCGCGCCGTCAGCGCAATGGCCATCGGCAATGCGATGGAATGGT TCGACTTCGGCGTCTACAGCTATATCGCCGTCACGCTCGGCAAGGTGTTCTTTCCGTCCAGCAGCCCGTCCGCGCAGTTG CTGGCCACCTTCGGCACGTTCGCGGCCGCGTTCCTCGTGCGCCCGCTCGGCGGCATGGTGTTCGGCCCGCTCGGCGACCG CATCGGCCGCCAGCGCGTGCTCGCCGCCACGATGATCATGATGGCCGTCGGCACCTTCGCGATCGGCCTGATCCCGAGCT ATGCGTCGATCGGCATCATGGCCCCGATCCTGCTGCTCGTCGCCCGCCTCGTGCAGGGCTTCTCGACCGGCGGCGAGTAC GGCGGCGCCGCCACTTTCATCGCCGAGTTCTCGACCGACAAGCGCCGCGGCTTCATGGGCAGCTTCCTCGAATTCGGCAC GCTGATCGGCTATGTGCTGGGCGCGGGCGTCGTCGCACTGCTCACCGCGTCGCTGTCGCAGGAAGCGCTGCTGTCGTGGG GCTGGCGCGTGCCGTTCCTGATCGCCGGGCCGCTCGGCCTGATCGGTCTGTACATCCGGATGAAGCTCGAGGAAACGCCG GCGTTCAAGCGCCAGGCCGAAGAGCGCGAAGCGCAGGACAAGGCCGTGCCGAAGGCGCGCTTTCGCGAGACGCTGCTGCG CAACTGGCGTGCGCTGCTGCTGTGCGTCGGCCTCGTGCTGATCTTCAACGTGACCGACTACATGGTGCTGTCTTACCTGC CGAGCTTCATGTCGTCGACGCTGCACTTCGACGAATCGCACAGCCTCGTGCTGGTGCTGATCGTGATGGTGCTGATGATG CCGATGACGCTGTACGCCGGCCGCCTGTCGGACAAGGTCGGCCGCAAGCCGGTGATGCTCGCCGGCTGCGTCGGCCTGCT GGTGCTGTCGATCCCGTCGCTGATGCTGATCCACACGGGCACCACGGCGTCGGTGTTCGGCGGCCTGCTGATCCTCGGCG TGCTGCTGTCGTGCTTCACCGGCGTGATGCCGTCGGCGCTGCCCGCGCTGTTCCCGACCGAGATCCGCTACGGCGCGCTC GCGATCGGCTTCAACGTGTCGGTGTCGCTGTTCGGCGGCACGACGCCGCTGGTGACCGCGTGGCTCGTCGACGTGACGCA CAACCTGATGATGCCCGCGTACTACATGATGGGCGCCGCGCTGATCGGCATCGTGTCGGTCGTCGCGCTCGCCGAAACCG CGCGCCAGCCGCTGAAGGGCTCGCCGCCGGCCGTCGCGACGCGCCGCGAAGCGCACCAGCTGGCGCGCCAGTTGCGCGAG GACGACGACGAATCGGAGGTCTACGGCGTCGCGACGCCCGCCCGCGCGTAA
Upstream 100 bases:
>100_bases AAGTGCTTAATGGTCTGCCCCGACGCGCAGCACACGACACCGCGCTCGCCGGCAAACCGTGTCGGACGGCCTGCCCGTTC CGGCGCTGTCAAAGGAGTGC
Downstream 100 bases:
>100_bases GCGTCGCGCAATGAAAAAGCCCCGGCCGAAGCCGGGGCCCGATCGAACCCGATCTGCCCGACCGGCTTGCGCCGGCCGGG CTTTTTTCATTCAGTCGGCA
Product: general substrate transporter
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Proline porter II; PPII [H]
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MTLTATHVSPTAVSSPASSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQL LATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGGEY GGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP AFKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMM PMTLYAGRLSDKVGRKPVMLAGCVGLLVLSIPSLMLIHTGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGAL AIGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAALIGIVSVVALAETARQPLKGSPPAVATRREAHQLARQLRE DDDESEVYGVATPARA
Sequences:
>Translated_496_residues MTLTATHVSPTAVSSPASSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQL LATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGGEY GGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP AFKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMM PMTLYAGRLSDKVGRKPVMLAGCVGLLVLSIPSLMLIHTGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGAL AIGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAALIGIVSVVALAETARQPLKGSPPAVATRREAHQLARQLRE DDDESEVYGVATPARA >Mature_495_residues TLTATHVSPTAVSSPASSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLL ATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGGEYG GAATFIAEFSTDKRRGFMGSFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETPA FKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMMP MTLYAGRLSDKVGRKPVMLAGCVGLLVLSIPSLMLIHTGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALA IGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAALIGIVSVVALAETARQPLKGSPPAVATRREAHQLARQLRED DDESEVYGVATPARA
Specific function: Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=474, Percent_Identity=50.42194092827, Blast_Score=514, Evalue=1e-147, Organism=Escherichia coli, GI1788292, Length=433, Percent_Identity=31.4087759815243, Blast_Score=209, Evalue=5e-55, Organism=Escherichia coli, GI1788942, Length=405, Percent_Identity=34.5679012345679, Blast_Score=203, Evalue=2e-53, Organism=Escherichia coli, GI1789941, Length=426, Percent_Identity=33.3333333333333, Blast_Score=191, Evalue=7e-50, Organism=Escherichia coli, GI87082231, Length=430, Percent_Identity=23.4883720930233, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI87082404, Length=365, Percent_Identity=23.2876712328767, Blast_Score=75, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR015041 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF08946 Osmo_CC; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52838; Mature: 52707
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTATHVSPTAVSSPASSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYS CCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH YIAVTLGKVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIM HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHH MAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH SFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECHHHHHHHHHHEEECCCC AFKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSST HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHFDESHSLVLVLIVMVLMMPMTLYAGRLSDKVGRKPVMLAGCVGLLVLSIPSLMLIHTG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECC TTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLVTA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECEEEEEEECCCHHHHHH WLVDVTHNLMMPAYYMMGAALIGIVSVVALAETARQPLKGSPPAVATRREAHQLARQLRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC DDDESEVYGVATPARA CCCCCCEEECCCCCCC >Mature Secondary Structure TLTATHVSPTAVSSPASSSGEAPLAADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYS CEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH YIAVTLGKVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIM HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHH MAVGTFAIGLIPSYASIGIMAPILLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH SFLEFGTLIGYVLGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECHHHHHHHHHHEEECCCC AFKRQAEEREAQDKAVPKARFRETLLRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSST HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHFDESHSLVLVLIVMVLMMPMTLYAGRLSDKVGRKPVMLAGCVGLLVLSIPSLMLIHTG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECC TTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLVTA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEECEEEEEEECCCHHHHHH WLVDVTHNLMMPAYYMMGAALIGIVSVVALAETARQPLKGSPPAVATRREAHQLARQLRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC DDDESEVYGVATPARA CCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]