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The map label for this gene is yvdE [H]

Identifier: 116517015

GI number: 116517015

Start: 989684

End: 990373

Strand: Reverse

Name: yvdE [H]

Synonym: SPD_0974

Alternate gene names: 116517015

Gene position: 990373-989684 (Counterclockwise)

Preceding gene: 116515408

Following gene: 116516388

Centisome position: 48.4

GC content: 41.74

Gene sequence:

>690_bases
ATGAAAAAACCAGTTATTGGGATTACAGGAAACGAAAAAACTCATCCAGATGATGACATCATGATGAGCTACGCAGCAAA
AGGCTTTGTTGAAGGCGTTAAAGATGCTGGAGGGATTCCCATCATCCTACCGATTGGTGATCAAGAAATGGCCTGCCACT
ATATCAGTTTGATTGACAAGCTCATCTTGACAGGTGGGCAAAATGTCGATCCAAAATTCTATGGCGAACCCAAAACCATT
GATAGCGATGATTATCACCTTCAAAGAGATATCTTCGAACTGGCCCTCATCAAGGAAGCTATTAAACAGAAAAAGCCCAT
TTTCTCTGTCTGCCGTGGTACCCAACTCTTTAACGTTGCCATGGGTGGAACTTTGTACCAAGATATCGAAGACCATTGGC
AGGATTCTTCTGTTGAGTACACAACTCAACGCTTGGTAACAGAAACAGATACCGTTCTCCAAGAAATCTATGGAGAAATC
TCTCATATCAACTCCTTCCACCACCAGAGCATCAAGGACTTAGCACCAAATTTAAAAGTTGTGGCTCATGATCCTAAAGA
TGGTATCATTGAGGCTGTCATGAGTACGGATGATGTCGCCTTTCTCGGTGTCCAATGGCATCCAGAACTTCTTTTTGAAA
ATCGTCCCAAAGATAAAAAACTCTTTGACTATGTCGTTAATGAACTTTAG

Upstream 100 bases:

>100_bases
TACCAAAAGACGTGGTCGTTCAGTATGTCGATTTGACAAGTGAACTCCAAACCCTCCTCTACTTCATGCGAAAAGAGGAT
TAGAAAGCGAAAATCATTTT

Downstream 100 bases:

>100_bases
ATTAAATCTGTCTTTTCACGATAACTAAAGTAATTAGAATGAGAGACAATCAAATGGTCCAAGAGAACAATCCCCATCAG
TTCGCAGGCTTCTTTAACAA

Product: class I glutamine amidotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDKLILTGGQNVDPKFYGEPKTI
DSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVAMGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEI
SHINSFHHQSIKDLAPNLKVVAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL

Sequences:

>Translated_229_residues
MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDKLILTGGQNVDPKFYGEPKTI
DSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVAMGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEI
SHINSFHHQSIKDLAPNLKVVAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
>Mature_229_residues
MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDKLILTGGQNVDPKFYGEPKTI
DSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVAMGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEI
SHINSFHHQSIKDLAPNLKVVAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL

Specific function: Unknown

COG id: COG2071

COG function: function code R; Predicted glutamine amidotransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081871, Length=228, Percent_Identity=32.0175438596491, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017926
- InterPro:   IPR011697 [H]

Pfam domain/function: PF07722 Peptidase_C26 [H]

EC number: NA

Molecular weight: Translated: 25817; Mature: 25817

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEHH
MGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
EEECCCHHHHHHHHCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKPVIGITGNEKTHPDDDIMMSYAAKGFVEGVKDAGGIPIILPIGDQEMACHYISLIDK
CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
LILTGGQNVDPKFYGEPKTIDSDDYHLQRDIFELALIKEAIKQKKPIFSVCRGTQLFNVA
HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEHH
MGGTLYQDIEDHWQDSSVEYTTQRLVTETDTVLQEIYGEISHINSFHHQSIKDLAPNLKV
HCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
VAHDPKDGIIEAVMSTDDVAFLGVQWHPELLFENRPKDKKLFDYVVNEL
EEECCCHHHHHHHHCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]