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The map label for this gene is rex

Identifier: 116515408

GI number: 116515408

Start: 990391

End: 991032

Strand: Reverse

Name: rex

Synonym: SPD_0976

Alternate gene names: 116515408

Gene position: 991032-990391 (Counterclockwise)

Preceding gene: 116516287

Following gene: 116517015

Centisome position: 48.43

GC content: 41.9

Gene sequence:

>642_bases
GTGAAAGATAAACAGTTTGCTATTCCAAAAGCTACAGCAAAAAGACTCTCTCTCTACTATCGAATTTTTAAGAGATTTCA
TGCAGAAAAGATTGAACGTGCCAACTCTAAGCAAATTGCAGAGGCCATTGGGATTGATTCAGCGACCGTACGTCGTGATT
TTTCCTATTTTGGTGAACTTGGTCGTCGTGGTTTTGGCTATGATGTCAAAAAACTAATGACATTTTTTGCCGATTTGCTC
AATGACAACTCTATTACCAATGTCATGCTGGTTGGTATTGGAAATATGGGCCATGCCCTTCTCCACTACCGCTTCCACGA
ACGTAACAAGATGAAGATTATCATGGCCTTTGACCTAGATGACCATCCTGAAGTCGGTACCCAAACTCCTGACGGGATTC
CCATTTACGGAATTTCTCAGATCAAGGATAAAATCAAGGATACTGATGTGAAGACTGCTATCCTAACTGTTCCCAGCGTC
AAGTCACAAGAGGTTGCTAATCTCTTGGTTGATGCTGGTGTGAAAGGAATTCTCAGTTTTTCACCAGTCCATCTGCATTT
ACCAAAAGACGTGGTCGTTCAGTATGTCGATTTGACAAGTGAACTCCAAACCCTCCTCTACTTCATGCGAAAAGAGGATT
AG

Upstream 100 bases:

>100_bases
TTTTTACATCAAAACTAAGATTTTTCTTAGTTTTTTCTTATTTTTGTTGATTTTTTCACAATGTTTCTATAAAATAGAAG
AATAGAAAGGTTGTGATTTT

Downstream 100 bases:

>100_bases
AAAGCGAAAATCATTTTATGAAAAAACCAGTTATTGGGATTACAGGAAACGAAAAAACTCATCCAGATGATGACATCATG
ATGAGCTACGCAGCAAAAGG

Product: redox-sensing transcriptional repressor Rex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKDKQFAIPKATAKRLSLYYRIFKRFHAEKIERANSKQIAEAIGIDSATVRRDFSYFGELGRRGFGYDVKKLMTFFADLL
NDNSITNVMLVGIGNMGHALLHYRFHERNKMKIIMAFDLDDHPEVGTQTPDGIPIYGISQIKDKIKDTDVKTAILTVPSV
KSQEVANLLVDAGVKGILSFSPVHLHLPKDVVVQYVDLTSELQTLLYFMRKED

Sequences:

>Translated_213_residues
MKDKQFAIPKATAKRLSLYYRIFKRFHAEKIERANSKQIAEAIGIDSATVRRDFSYFGELGRRGFGYDVKKLMTFFADLL
NDNSITNVMLVGIGNMGHALLHYRFHERNKMKIIMAFDLDDHPEVGTQTPDGIPIYGISQIKDKIKDTDVKTAILTVPSV
KSQEVANLLVDAGVKGILSFSPVHLHLPKDVVVQYVDLTSELQTLLYFMRKED
>Mature_213_residues
MKDKQFAIPKATAKRLSLYYRIFKRFHAEKIERANSKQIAEAIGIDSATVRRDFSYFGELGRRGFGYDVKKLMTFFADLL
NDNSITNVMLVGIGNMGHALLHYRFHERNKMKIIMAFDLDDHPEVGTQTPDGIPIYGISQIKDKIKDTDVKTAILTVPSV
KSQEVANLLVDAGVKGILSFSPVHLHLPKDVVVQYVDLTSELQTLLYFMRKED

Specific function: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state

COG id: COG2344

COG function: function code R; AT-rich DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory rex family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REX_STRP2 (Q04KJ6)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816452.1
- ProteinModelPortal:   Q04KJ6
- SMR:   Q04KJ6
- STRING:   Q04KJ6
- EnsemblBacteria:   EBSTRT00000019346
- GeneID:   4442478
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_0976
- eggNOG:   COG2344
- GeneTree:   EBGT00050000027130
- HOGENOM:   HBG482264
- OMA:   TRGVGYD
- ProtClustDB:   PRK05472
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01131
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR009718
- InterPro:   IPR022876
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00881

Pfam domain/function: PF02629 CoA_binding; PF06971 Put_DNA-bind_N

EC number: NA

Molecular weight: Translated: 24195; Mature: 24195

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKQFAIPKATAKRLSLYYRIFKRFHAEKIERANSKQIAEAIGIDSATVRRDFSYFGEL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
GRRGFGYDVKKLMTFFADLLNDNSITNVMLVGIGNMGHALLHYRFHERNKMKIIMAFDLD
CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCC
DHPEVGTQTPDGIPIYGISQIKDKIKDTDVKTAILTVPSVKSQEVANLLVDAGVKGILSF
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCHHHHHCC
SPVHLHLPKDVVVQYVDLTSELQTLLYFMRKED
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDKQFAIPKATAKRLSLYYRIFKRFHAEKIERANSKQIAEAIGIDSATVRRDFSYFGEL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH
GRRGFGYDVKKLMTFFADLLNDNSITNVMLVGIGNMGHALLHYRFHERNKMKIIMAFDLD
CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEEEECCC
DHPEVGTQTPDGIPIYGISQIKDKIKDTDVKTAILTVPSVKSQEVANLLVDAGVKGILSF
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHEEEEECCCCCHHHHHHHHHHHCHHHHHCC
SPVHLHLPKDVVVQYVDLTSELQTLLYFMRKED
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA