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The map label for this gene is yfbE [C]

Identifier: 116516120

GI number: 116516120

Start: 1633887

End: 1635113

Strand: Reverse

Name: yfbE [C]

Synonym: SPD_1619

Alternate gene names: 116516120

Gene position: 1635113-1633887 (Counterclockwise)

Preceding gene: 116516993

Following gene: 116515361

Centisome position: 79.91

GC content: 44.09

Gene sequence:

>1227_bases
ATGCCAAATTACAATATTCCATTTTCACCGCCTGATATCACAGAAGCAGAAATTGCTGAAGTAGCGGATACCCTGCGTTC
TGGTTGGATCACAACAGGTCCTAAAACAAAAGAACTGGAGCGCCGCTTGTCTCTTTACACACAGACACCTAAGACTGTTT
GTCTCAACTCTGCGACAGCCGCTCTGGAGTTGATTTTACGCGTTTTGGAAGTGGGACCTGGTGATGAAGTCATCGTTCCA
GCCATGACCTATACGGCTTCATGTAGTGTCATTACGCACGTGGGAGCAACCCCTGTCATGGTGGATATCCAAGCAGATAC
GTTTGAGATGGACTATGACCTGCTTGAGCAAGCTATCACTGAGAAAACTAAGGTGATTATCCCAGTAGAGCTCGCAGGGA
TTGTTTGCGATTATGACCGTTTGTTCCAAGTCGTGGAGAAAAAACGTGACTTCTTTACCGCTTCAAGCAAGTGGCAAAAG
GCCTTTAACCGTATTGTCATTGTCTCTGATAGTGCCCACGCTTTGGGATCTACTTATAAAGGACAACCTTCTGGTTCTAT
CGCTGATTTTACTTCCTTCTCATTCCATGCTGTTAAGAACTTTACAACGGCAGAAGGTGGAAGTGCGACTTGGAAAGCCA
ATCCAGTGATTGATGACGAAGAGATGTACAAGGAATTCCAAATCCTTTCCCTTCACGGGCAAACTAAGGATGCTCTTGCC
AAGATGCAACTGGGGTCATGGGAATACGATATCGTTACACCAGCCTATAAGTGCAACATGACCGATATCATGGCTTCACT
TGGTTTGGTACAATTGGACCGCTATCCAAGTTTGTTGCAACGCCGTAAGGACATTGTGGACCGCTATGATAGTGGTTTTG
CAGGTTCTCGCATCCATCCTTTGGCACACAAGACTGAAACTGTCGAATCTTCACGCCACCTCTACATCACCCGTGTAGAA
GGAGTAAGCCTAGAAGAACGCAACCTCATCATCCAAGAATTGGCTAAAGCAGGAATTGCAAGTAATGTTCACTACAAACC
GCTTCCTCTCTTGACAGCCTATAAGAATCTTGGATTTGATATGACGAACTATCCTAAGGCCTATGCCTTCTTTGAGAATG
AAATTACCCTCCCTCTTCATACTAAATTAAGCGATGAAGAAGTAGACTATATCATTGAGACTTTCAAAACAGTTTCTGAA
AAAGTGCTAACTTTATCAAAAAAATGA

Upstream 100 bases:

>100_bases
TAGTTTCTTTGGGGACATCAAAATCATGTTTCAAACCGTGTTTGAGGTACTAAAATAAAGTAGTCATAAGAAAATGAGTA
CAGATAAAAGGAGCAAATCA

Downstream 100 bases:

>100_bases
CAAACTACAGTCAAGCGAAAGTGATCCTGTCCCTAAAAAGTCTAATTGAGTGTAAAAACTGTTGTTTTCAATTGATAATA
GTTTACACCTGTAGTTGAGG

Product: capsular polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MPNYNIPFSPPDITEAEIAEVADTLRSGWITTGPKTKELERRLSLYTQTPKTVCLNSATAALELILRVLEVGPGDEVIVP
AMTYTASCSVITHVGATPVMVDIQADTFEMDYDLLEQAITEKTKVIIPVELAGIVCDYDRLFQVVEKKRDFFTASSKWQK
AFNRIVIVSDSAHALGSTYKGQPSGSIADFTSFSFHAVKNFTTAEGGSATWKANPVIDDEEMYKEFQILSLHGQTKDALA
KMQLGSWEYDIVTPAYKCNMTDIMASLGLVQLDRYPSLLQRRKDIVDRYDSGFAGSRIHPLAHKTETVESSRHLYITRVE
GVSLEERNLIIQELAKAGIASNVHYKPLPLLTAYKNLGFDMTNYPKAYAFFENEITLPLHTKLSDEEVDYIIETFKTVSE
KVLTLSKK

Sequences:

>Translated_408_residues
MPNYNIPFSPPDITEAEIAEVADTLRSGWITTGPKTKELERRLSLYTQTPKTVCLNSATAALELILRVLEVGPGDEVIVP
AMTYTASCSVITHVGATPVMVDIQADTFEMDYDLLEQAITEKTKVIIPVELAGIVCDYDRLFQVVEKKRDFFTASSKWQK
AFNRIVIVSDSAHALGSTYKGQPSGSIADFTSFSFHAVKNFTTAEGGSATWKANPVIDDEEMYKEFQILSLHGQTKDALA
KMQLGSWEYDIVTPAYKCNMTDIMASLGLVQLDRYPSLLQRRKDIVDRYDSGFAGSRIHPLAHKTETVESSRHLYITRVE
GVSLEERNLIIQELAKAGIASNVHYKPLPLLTAYKNLGFDMTNYPKAYAFFENEITLPLHTKLSDEEVDYIIETFKTVSE
KVLTLSKK
>Mature_407_residues
PNYNIPFSPPDITEAEIAEVADTLRSGWITTGPKTKELERRLSLYTQTPKTVCLNSATAALELILRVLEVGPGDEVIVPA
MTYTASCSVITHVGATPVMVDIQADTFEMDYDLLEQAITEKTKVIIPVELAGIVCDYDRLFQVVEKKRDFFTASSKWQKA
FNRIVIVSDSAHALGSTYKGQPSGSIADFTSFSFHAVKNFTTAEGGSATWKANPVIDDEEMYKEFQILSLHGQTKDALAK
MQLGSWEYDIVTPAYKCNMTDIMASLGLVQLDRYPSLLQRRKDIVDRYDSGFAGSRIHPLAHKTETVESSRHLYITRVEG
VSLEERNLIIQELAKAGIASNVHYKPLPLLTAYKNLGFDMTNYPKAYAFFENEITLPLHTKLSDEEVDYIIETFKTVSEK
VLTLSKK

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=399, Percent_Identity=33.0827067669173, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI2367285, Length=358, Percent_Identity=28.2122905027933, Blast_Score=148, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45635; Mature: 45503

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNYNIPFSPPDITEAEIAEVADTLRSGWITTGPKTKELERRLSLYTQTPKTVCLNSATA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHEEECCHHH
ALELILRVLEVGPGDEVIVPAMTYTASCSVITHVGATPVMVDIQADTFEMDYDLLEQAIT
HHHHHHHHHHCCCCCCEEEEEEEEECCCHHEEECCCCCEEEEEECCCEECCHHHHHHHHH
EKTKVIIPVELAGIVCDYDRLFQVVEKKRDFFTASSKWQKAFNRIVIVSDSAHALGSTYK
CCCEEEEEEEHHHEEECHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEEECCCHHHCCCCC
GQPSGSIADFTSFSFHAVKNFTTAEGGSATWKANPVIDDEEMYKEFQILSLHGQTKDALA
CCCCCCCCHHCCCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHEEEEEECCCCHHHHH
KMQLGSWEYDIVTPAYKCNMTDIMASLGLVQLDRYPSLLQRRKDIVDRYDSGFAGSRIHP
HHHCCCEEEEEECCCCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
LAHKTETVESSRHLYITRVEGVSLEERNLIIQELAKAGIASNVHYKPLPLLTAYKNLGFD
CHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
MTNYPKAYAFFENEITLPLHTKLSDEEVDYIIETFKTVSEKVLTLSKK
CCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PNYNIPFSPPDITEAEIAEVADTLRSGWITTGPKTKELERRLSLYTQTPKTVCLNSATA
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHEEECCHHH
ALELILRVLEVGPGDEVIVPAMTYTASCSVITHVGATPVMVDIQADTFEMDYDLLEQAIT
HHHHHHHHHHCCCCCCEEEEEEEEECCCHHEEECCCCCEEEEEECCCEECCHHHHHHHHH
EKTKVIIPVELAGIVCDYDRLFQVVEKKRDFFTASSKWQKAFNRIVIVSDSAHALGSTYK
CCCEEEEEEEHHHEEECHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEEECCCHHHCCCCC
GQPSGSIADFTSFSFHAVKNFTTAEGGSATWKANPVIDDEEMYKEFQILSLHGQTKDALA
CCCCCCCCHHCCCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHEEEEEECCCCHHHHH
KMQLGSWEYDIVTPAYKCNMTDIMASLGLVQLDRYPSLLQRRKDIVDRYDSGFAGSRIHP
HHHCCCEEEEEECCCCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCC
LAHKTETVESSRHLYITRVEGVSLEERNLIIQELAKAGIASNVHYKPLPLLTAYKNLGFD
CHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
MTNYPKAYAFFENEITLPLHTKLSDEEVDYIIETFKTVSEKVLTLSKK
CCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]