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The map label for this gene is xerC [C]

Identifier: 116515761

GI number: 116515761

Start: 460011

End: 460808

Strand: Reverse

Name: xerC [C]

Synonym: SPD_0452

Alternate gene names: 116515761

Gene position: 460808-460011 (Counterclockwise)

Preceding gene: 116515523

Following gene: 116516954

Centisome position: 22.52

GC content: 30.08

Gene sequence:

>798_bases
TTGAAAGATTTTGAATTACATTTGAAGAAAGCTGGTTTAGCTGAAAATACTGTGCGTTCGTACCTTTATGGTGTTCGATT
TTTCTTGGAGAATTACAAACTCAAAATGGAAGATTTATTTGAATACAAAGGATATTTATTAGACAATTTTAAACCTAAAA
CTGTCAATTTGCGACTACAAGGAGTAAATAAATATCTGGCTTTTATTGGTCATGATGATTTGAAATTAAAATTTGTCAAA
GTACAGCAAAAACCGTTTTTAGAAGATGTCATTAGCCATGCTGATTACCTTTTTCTTAAACGTAGTTTGAAAAAAGATGG
TATTTTAAAATGGCATTTTGTCGTTTGGTTTTTAGGTGCAACTGGGGCTCGTGTAAGTGAACTTATTAAACTAAAAGTAG
AGCATGTAGAAATCGGTTATTTTGACATTTACTCAAAAGGTGGTAAAATTCGTAGACTGTACATTCCTAAAAAATTAAGA
AATAGTTGTCTTAGTTGGTTAGAATCAGAAAATCGCCGAAGTGGTTATTTATTTTTGAATAAATTTAACGAACCAATTAC
AGCAAGAGGAGTTGCTCAACAGTTAAAAAATTATGCTGATAAATACAAAATGAATCCTAAAGTAATTTACCCTCATTCTT
TTAGGCATTTATTTGCTAAGAATTTTTTAGCGAAGTATAATGATATTGCCTTGCTTGCAGATTTGATGGGACACGAAAGT
ATAGAAACTACTCGAATTTATCTAAGGAAAACAGCTACTGAACAACAAAATATTGTAGATAAAATTGTTAATTGGTAA

Upstream 100 bases:

>100_bases
ATAAAATCGAACAATTTTTCGCCCATATTGACGCACTAATTTAGTATAATAGTTTTACGTGCGGTGGAATTTCTATCAAA
CATAAGATAGGAGTTTTACG

Downstream 100 bases:

>100_bases
AAAATAACAGGTGGTCAAACTGACTACCTGCTATTTTTGTGATTATGGCTCTTATTATGGGAATATACCTATGAATTGGG
TTGTTATAAAAATAAAAGAT

Product: integrase/recombinase, phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQGVNKYLAFIGHDDLKLKFVK
VQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGATGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLR
NSCLSWLESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
IETTRIYLRKTATEQQNIVDKIVNW

Sequences:

>Translated_265_residues
MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQGVNKYLAFIGHDDLKLKFVK
VQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGATGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLR
NSCLSWLESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
IETTRIYLRKTATEQQNIVDKIVNW
>Mature_265_residues
MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQGVNKYLAFIGHDDLKLKFVK
VQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGATGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLR
NSCLSWLESENRRSGYLFLNKFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
IETTRIYLRKTATEQQNIVDKIVNW

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=133, Percent_Identity=32.3308270676692, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31318; Mature: 31318

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQ
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCCEEEEEEE
GVNKYLAFIGHDDLKLKFVKVQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGA
CHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCC
TGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLRNSCLSWLESENRRSGYLFLN
CCHHHHHHHHHHHEEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEE
KFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IETTRIYLRKTATEQQNIVDKIVNW
CHHHHHEEEHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQ
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCCEEEEEEE
GVNKYLAFIGHDDLKLKFVKVQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGA
CHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCC
TGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLRNSCLSWLESENRRSGYLFLN
CCHHHHHHHHHHHEEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEE
KFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IETTRIYLRKTATEQQNIVDKIVNW
CHHHHHEEEHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA