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The map label for this gene is yfjD [C]

Identifier: 116515537

GI number: 116515537

Start: 1759848

End: 1761179

Strand: Reverse

Name: yfjD [C]

Synonym: SPD_1761

Alternate gene names: 116515537

Gene position: 1761179-1759848 (Counterclockwise)

Preceding gene: 116516431

Following gene: 116516435

Centisome position: 86.07

GC content: 40.17

Gene sequence:

>1332_bases
ATGGAAGACCCAAGTAGTCAGAATTTGTTGCTACAATTTGTTTTATTGTTTATCTTGACGGTATTAAATGCCTTTTTCTC
AGCCACAGAAATGGCCATGGTTTCTCTTAATCGTGCCCGAGTTGAACAAAAGGCGGAAGAAGGAGACAGACGCTACATCC
GCCTGCTGAAGGTACTAGAAAATCCTAACCACTTTTTATCAACCATTCAGGTAGGAATCACCCTGATTACAATCTTATCA
GGGGCGAGTTTAACTAATACTCTAGGACGTGTGATTGCCTCTTGGCTTGGGAATGGCGAAACAGCACAAGCCGTGGCAAC
TTTTCTATCCTTGGCATTTTTGACCTATATTTCCATCGTTTTTGGGGAATTATATCCTAAGAGAATCGCTCTTAATCTAA
AGGATGCCTTGGCAATTCGTACAGCGCCGATTATCATTGGGATCGGAAAACTAGTCAGTCCTTTTGTTTGGCTTTTAGCT
GCTTCGACCAATTTCTTGAGCCATTTGACTCCTATGTCATTCGATGATGCGGATGAAAAGATGACCCGTGATGAAATTGC
CTATATGCTGACAAATAGTGAAGAAACATTGGATGCTGATGAGATTGAGATGCTACAAGGTGTCTTTTCGCTCGATGAAC
TGATGGCACGAGAGGTTATGGTGCCTCGAACGGATGCCTTTATGGTGGATATTCAGGATGATAGTCAAGCCATTATCCAA
AGTATTTTAAAACAAAATTATTCTCGTATCCCGGTTTATGATGGGGATAAGGACAATGTAATTGGAATCATTCACACCAA
GAGTCTCCTTAAGGCAGGCTTTGTGGACGGTTTTGACAATATTGTTTGGAAGAGAATTTTACAAGATCCACTTTTTGTAC
CTGAAACTATTTTTGTGGATGACTTGCTAAAAGAACTGCGAAATACCCAAAGACAAATGGCAATCTTGCTGGATGAATAC
GGTGGTATGGCTGGTTTGGTGACTTTGGAAGACCTCTTAGAGGAAATTGTTGGTGAAATTGATGATGAAACGGACAAAGC
AGCAATAGATGTTCATCAGATTGGCGAGGATACCTACATTGTTCAAGGAACTATGACCCTCAATGATTTCAATAATTACT
TTGATGTTGAACTGGAAAGTGATGACGTTGATACCATCGCTGGTTATTATTTGACAGGAGTGGGAACTATTCCAACGACT
GAGAAACTCAGCTATGAATTGGTCAGCCAAAACAAACAGTTTATCTTAACCAATGATAAAGTGAAGAATGGACGTGTTAC
CAAGGTAAAAGTCCAAATCACAGAAGTCGAAATAGAAGAAGAAACAGAATAA

Upstream 100 bases:

>100_bases
TGGAAGTTACTTTGAGAAGTTACGGTAAGAAAAAATAATATGTATTGGATTAAATTTTGTGATATAATAAAGGATAAGAT
ACTATTTTAGGAGAAGAACT

Downstream 100 bases:

>100_bases
ACTAGAGGCTTTTGTCACCAGGCGTGACGAAGCTTTTTTCAATTGATTTCAAAAGGGAATTATGCCATGGAAAGAACTCT
GCCACAAACTCGCTCCAAAA

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MEDPSSQNLLLQFVLLFILTVLNAFFSATEMAMVSLNRARVEQKAEEGDRRYIRLLKVLENPNHFLSTIQVGITLITILS
GASLTNTLGRVIASWLGNGETAQAVATFLSLAFLTYISIVFGELYPKRIALNLKDALAIRTAPIIIGIGKLVSPFVWLLA
ASTNFLSHLTPMSFDDADEKMTRDEIAYMLTNSEETLDADEIEMLQGVFSLDELMAREVMVPRTDAFMVDIQDDSQAIIQ
SILKQNYSRIPVYDGDKDNVIGIIHTKSLLKAGFVDGFDNIVWKRILQDPLFVPETIFVDDLLKELRNTQRQMAILLDEY
GGMAGLVTLEDLLEEIVGEIDDETDKAAIDVHQIGEDTYIVQGTMTLNDFNNYFDVELESDDVDTIAGYYLTGVGTIPTT
EKLSYELVSQNKQFILTNDKVKNGRVTKVKVQITEVEIEEETE

Sequences:

>Translated_443_residues
MEDPSSQNLLLQFVLLFILTVLNAFFSATEMAMVSLNRARVEQKAEEGDRRYIRLLKVLENPNHFLSTIQVGITLITILS
GASLTNTLGRVIASWLGNGETAQAVATFLSLAFLTYISIVFGELYPKRIALNLKDALAIRTAPIIIGIGKLVSPFVWLLA
ASTNFLSHLTPMSFDDADEKMTRDEIAYMLTNSEETLDADEIEMLQGVFSLDELMAREVMVPRTDAFMVDIQDDSQAIIQ
SILKQNYSRIPVYDGDKDNVIGIIHTKSLLKAGFVDGFDNIVWKRILQDPLFVPETIFVDDLLKELRNTQRQMAILLDEY
GGMAGLVTLEDLLEEIVGEIDDETDKAAIDVHQIGEDTYIVQGTMTLNDFNNYFDVELESDDVDTIAGYYLTGVGTIPTT
EKLSYELVSQNKQFILTNDKVKNGRVTKVKVQITEVEIEEETE
>Mature_443_residues
MEDPSSQNLLLQFVLLFILTVLNAFFSATEMAMVSLNRARVEQKAEEGDRRYIRLLKVLENPNHFLSTIQVGITLITILS
GASLTNTLGRVIASWLGNGETAQAVATFLSLAFLTYISIVFGELYPKRIALNLKDALAIRTAPIIIGIGKLVSPFVWLLA
ASTNFLSHLTPMSFDDADEKMTRDEIAYMLTNSEETLDADEIEMLQGVFSLDELMAREVMVPRTDAFMVDIQDDSQAIIQ
SILKQNYSRIPVYDGDKDNVIGIIHTKSLLKAGFVDGFDNIVWKRILQDPLFVPETIFVDDLLKELRNTQRQMAILLDEY
GGMAGLVTLEDLLEEIVGEIDDETDKAAIDVHQIGEDTYIVQGTMTLNDFNNYFDVELESDDVDTIAGYYLTGVGTIPTT
EKLSYELVSQNKQFILTNDKVKNGRVTKVKVQITEVEIEEETE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=381, Percent_Identity=31.758530183727, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI94681046, Length=352, Percent_Identity=28.6931818181818, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI40068055, Length=361, Percent_Identity=26.5927977839335, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI40068053, Length=361, Percent_Identity=26.5927977839335, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI145693175, Length=380, Percent_Identity=27.8947368421053, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1790664, Length=398, Percent_Identity=22.3618090452261, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1786879, Length=224, Percent_Identity=33.9285714285714, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082033, Length=253, Percent_Identity=27.2727272727273, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788119, Length=227, Percent_Identity=31.7180616740088, Blast_Score=86, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17539402, Length=370, Percent_Identity=24.5945945945946, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324512, Length=362, Percent_Identity=22.9281767955801, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 49636; Mature: 49636

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDPSSQNLLLQFVLLFILTVLNAFFSATEMAMVSLNRARVEQKAEEGDRRYIRLLKVLE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPNHFLSTIQVGITLITILSGASLTNTLGRVIASWLGNGETAQAVATFLSLAFLTYISIV
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FGELYPKRIALNLKDALAIRTAPIIIGIGKLVSPFVWLLAASTNFLSHLTPMSFDDADEK
HHHHCHHHEEECHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
MTRDEIAYMLTNSEETLDADEIEMLQGVFSLDELMAREVMVPRTDAFMVDIQDDSQAIIQ
HHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
SILKQNYSRIPVYDGDKDNVIGIIHTKSLLKAGFVDGFDNIVWKRILQDPLFVPETIFVD
HHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHH
DLLKELRNTQRQMAILLDEYGGMAGLVTLEDLLEEIVGEIDDETDKAAIDVHQIGEDTYI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEHHHCCCCEEE
VQGTMTLNDFNNYFDVELESDDVDTIAGYYLTGVGTIPTTEKLSYELVSQNKQFILTNDK
EEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEECCC
VKNGRVTKVKVQITEVEIEEETE
CCCCCEEEEEEEEEEEEECCCCC
>Mature Secondary Structure
MEDPSSQNLLLQFVLLFILTVLNAFFSATEMAMVSLNRARVEQKAEEGDRRYIRLLKVLE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NPNHFLSTIQVGITLITILSGASLTNTLGRVIASWLGNGETAQAVATFLSLAFLTYISIV
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
FGELYPKRIALNLKDALAIRTAPIIIGIGKLVSPFVWLLAASTNFLSHLTPMSFDDADEK
HHHHCHHHEEECHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
MTRDEIAYMLTNSEETLDADEIEMLQGVFSLDELMAREVMVPRTDAFMVDIQDDSQAIIQ
HHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH
SILKQNYSRIPVYDGDKDNVIGIIHTKSLLKAGFVDGFDNIVWKRILQDPLFVPETIFVD
HHHHCCCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHH
DLLKELRNTQRQMAILLDEYGGMAGLVTLEDLLEEIVGEIDDETDKAAIDVHQIGEDTYI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEHHHCCCCEEE
VQGTMTLNDFNNYFDVELESDDVDTIAGYYLTGVGTIPTTEKLSYELVSQNKQFILTNDK
EEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEECCC
VKNGRVTKVKVQITEVEIEEETE
CCCCCEEEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]