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The map label for this gene is yliB [C]

Identifier: 116515339

GI number: 116515339

Start: 1198369

End: 1199997

Strand: Reverse

Name: yliB [C]

Synonym: SPD_1170

Alternate gene names: 116515339

Gene position: 1199997-1198369 (Counterclockwise)

Preceding gene: 116516633

Following gene: 116516656

Centisome position: 58.65

GC content: 30.57

Gene sequence:

>1629_bases
ATGAAAAAAATTGTTAAATTAGCTTTAACAGCTGCAGCAGTTTTAATAGCTGTAGTAGGATTGGTTGCTTGTAGTTCGGG
AAGCAAAAAATCTGATTTTTCAGAGTCTGGAAAAGAAAAAGTATTCTATTTATCAGGTTTTCTTCAAGGAACTGGAGATC
GTATCCCTTACGTTTGGCAAAATGGTGATGGTTTAGTTCCATATTTGTTATACCGTACACTGTTAATGGCAGATTCAAAA
TATGAAAAATCAACTCCAGATTTAGCTAAAGATTGGAAAAAATCTGATGATGAAAAAACTTATGAATTTACACTTAAAGA
TGGATTGAAATGGTCTGATGGAGAAGCTTTGACAGCTTCCGATGTGGAATTCAGTGTTAAATTAGCATTGAAAGCTTCAG
TAATTAATGGAATTTTCCCTTCAACATTCACAAAAATTGAAGGAGCTAAAGATTTCAAAGACGATAAAGCAGATAAAATT
TCTGGTCTTACAGTTGATGGAAATAAAGTAACATTTAAACTTACTGCTCCAGTTGGTGACTTTGAGCAAATGATGACTCA
ATTCTTTATTCTTCCAAAACATAAATTAGAGTCTGAAAATCCTCTTGAATTAAATAATAGCTCATTTTGGACAGCTCCTG
TTACAAGCGGTATGTACAAAGTAAAAGAAATTAGTGCAGGTAATTTCTTAGAGTATGACAAAAATGAAAACTATGAAAAT
GAAAAACCAAAATTTGATAAAGTAGTATTCAACTATATTTCAGATCCAGTTTTAGCATTGCAAGATGGTAAATCATACTT
CTATTCAACAAACAAACCTCAAGAAATTAGTCAGTTGGATGCTGTATCTACTTTAAGTAAAAAACCAATTGATATCCTAT
TCTATCGCTACTTTATCGCTAACTTAGCAGGTGTCGAAGGTAATGGAGATTCCTTGATTGCTAATCCTAAAGTTAGAGAA
GCTATTCTATATGCAATTAATCGTGATGAATTAGCTAAATCTGTATTTAGTGGAATTGCAGATGTTAATAATACTGGTGT
TCCTTCAAGCTTAGAAGCTCATCTGAAATCAGCAAATAAATTTGAATATAATCCAGAAAAAGCAAAACAACTTCTTAAAG
AAGCTAAATACGATAATAGCAGAAATCTAATTTTAGCTTATTACTATAAAGATCAAGCCTCTCAAGATTTCATGCAAGCA
GTAAGTTATCAATTGAATGAGGTTGGAATCAAGAACGAAGTTGTCCAAATTACTTCTGATGCAACAACAGGATTGTTCAA
AACACGTAAATATGACCTAGCTTATAAAGGATTATCATCATTTGGTTATGAAACTTGGTATGGTGAATATAGTTCAACAA
ATACTAACTTTAAAAATATTACAAATGGCGAAACAAGTTTTGATGAGTTGAGCAAAAAATTGTCTGAAACTTCTGATGTA
AAAGAAAGAAACAAAATTTTAGCAAGTCTACAAAAATTAGAACAAGAAAAACTATTGAAGTTAAACTTATTCACATTTAA
AAACTTCTTGTATTTAAATACTGAAAAAGTTTTAATTCCTGACGATGTTCAATTTGGTAATCCATTCTATAAATTTGATT
ACAAATTCGAAAAATGGGATGCTAAATAA

Upstream 100 bases:

>100_bases
GTTAGAGGAGGAAATGTAACGAAGAGTTTAAATTTTTAATTACTGCAATACTTACTTAATCACATAAATAATTACTTAAT
ACAAATAAAGGAGTATTAAA

Downstream 100 bases:

>100_bases
AATCGTTTAAAATTATCAGTGATTAAGTTTGATAATCTTTTAGGAGTGTAGAGATGCTGGTTTATTGAATCATGTATCTC
TCACTCTTGTTTTTTCAGGA

Product: oligopeptide ABC transporteroligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MKKIVKLALTAAAVLIAVVGLVACSSGSKKSDFSESGKEKVFYLSGFLQGTGDRIPYVWQNGDGLVPYLLYRTLLMADSK
YEKSTPDLAKDWKKSDDEKTYEFTLKDGLKWSDGEALTASDVEFSVKLALKASVINGIFPSTFTKIEGAKDFKDDKADKI
SGLTVDGNKVTFKLTAPVGDFEQMMTQFFILPKHKLESENPLELNNSSFWTAPVTSGMYKVKEISAGNFLEYDKNENYEN
EKPKFDKVVFNYISDPVLALQDGKSYFYSTNKPQEISQLDAVSTLSKKPIDILFYRYFIANLAGVEGNGDSLIANPKVRE
AILYAINRDELAKSVFSGIADVNNTGVPSSLEAHLKSANKFEYNPEKAKQLLKEAKYDNSRNLILAYYYKDQASQDFMQA
VSYQLNEVGIKNEVVQITSDATTGLFKTRKYDLAYKGLSSFGYETWYGEYSSTNTNFKNITNGETSFDELSKKLSETSDV
KERNKILASLQKLEQEKLLKLNLFTFKNFLYLNTEKVLIPDDVQFGNPFYKFDYKFEKWDAK

Sequences:

>Translated_542_residues
MKKIVKLALTAAAVLIAVVGLVACSSGSKKSDFSESGKEKVFYLSGFLQGTGDRIPYVWQNGDGLVPYLLYRTLLMADSK
YEKSTPDLAKDWKKSDDEKTYEFTLKDGLKWSDGEALTASDVEFSVKLALKASVINGIFPSTFTKIEGAKDFKDDKADKI
SGLTVDGNKVTFKLTAPVGDFEQMMTQFFILPKHKLESENPLELNNSSFWTAPVTSGMYKVKEISAGNFLEYDKNENYEN
EKPKFDKVVFNYISDPVLALQDGKSYFYSTNKPQEISQLDAVSTLSKKPIDILFYRYFIANLAGVEGNGDSLIANPKVRE
AILYAINRDELAKSVFSGIADVNNTGVPSSLEAHLKSANKFEYNPEKAKQLLKEAKYDNSRNLILAYYYKDQASQDFMQA
VSYQLNEVGIKNEVVQITSDATTGLFKTRKYDLAYKGLSSFGYETWYGEYSSTNTNFKNITNGETSFDELSKKLSETSDV
KERNKILASLQKLEQEKLLKLNLFTFKNFLYLNTEKVLIPDDVQFGNPFYKFDYKFEKWDAK
>Mature_542_residues
MKKIVKLALTAAAVLIAVVGLVACSSGSKKSDFSESGKEKVFYLSGFLQGTGDRIPYVWQNGDGLVPYLLYRTLLMADSK
YEKSTPDLAKDWKKSDDEKTYEFTLKDGLKWSDGEALTASDVEFSVKLALKASVINGIFPSTFTKIEGAKDFKDDKADKI
SGLTVDGNKVTFKLTAPVGDFEQMMTQFFILPKHKLESENPLELNNSSFWTAPVTSGMYKVKEISAGNFLEYDKNENYEN
EKPKFDKVVFNYISDPVLALQDGKSYFYSTNKPQEISQLDAVSTLSKKPIDILFYRYFIANLAGVEGNGDSLIANPKVRE
AILYAINRDELAKSVFSGIADVNNTGVPSSLEAHLKSANKFEYNPEKAKQLLKEAKYDNSRNLILAYYYKDQASQDFMQA
VSYQLNEVGIKNEVVQITSDATTGLFKTRKYDLAYKGLSSFGYETWYGEYSSTNTNFKNITNGETSFDELSKKLSETSDV
KERNKILASLQKLEQEKLLKLNLFTFKNFLYLNTEKVLIPDDVQFGNPFYKFDYKFEKWDAK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=371, Percent_Identity=26.1455525606469, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1789966, Length=398, Percent_Identity=24.8743718592965, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61208; Mature: 61208

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIVKLALTAAAVLIAVVGLVACSSGSKKSDFSESGKEKVFYLSGFLQGTGDRIPYVWQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEE
NGDGLVPYLLYRTLLMADSKYEKSTPDLAKDWKKSDDEKTYEFTLKDGLKWSDGEALTAS
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEC
DVEFSVKLALKASVINGIFPSTFTKIEGAKDFKDDKADKISGLTVDGNKVTFKLTAPVGD
CCEEEEEEEEEHHHHHCCCCCHHHHCCCCCCCCCCCHHHCCCEEECCCEEEEEEECCCCH
FEQMMTQFFILPKHKLESENPLELNNSSFWTAPVTSGMYKVKEISAGNFLEYDKNENYEN
HHHHHHHHHCCCHHHCCCCCCCEECCCCEEECCCCCCCEEEEEECCCCCEECCCCCCCCC
EKPKFDKVVFNYISDPVLALQDGKSYFYSTNKPQEISQLDAVSTLSKKPIDILFYRYFIA
CCCHHHHHHHHHHCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
NLAGVEGNGDSLIANPKVREAILYAINRDELAKSVFSGIADVNNTGVPSSLEAHLKSANK
HHCCCCCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
FEYNPEKAKQLLKEAKYDNSRNLILAYYYKDQASQDFMQAVSYQLNEVGIKNEVVQITSD
CCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
ATTGLFKTRKYDLAYKGLSSFGYETWYGEYSSTNTNFKNITNGETSFDELSKKLSETSDV
CCCCHHHHCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KERNKILASLQKLEQEKLLKLNLFTFKNFLYLNTEKVLIPDDVQFGNPFYKFDYKFEKWD
HHHHHHHHHHHHHHHHHHHEEEHEEEEEEEEECCCEEECCCCCCCCCCEEEEEEEEECCC
AK
CC
>Mature Secondary Structure
MKKIVKLALTAAAVLIAVVGLVACSSGSKKSDFSESGKEKVFYLSGFLQGTGDRIPYVWQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEE
NGDGLVPYLLYRTLLMADSKYEKSTPDLAKDWKKSDDEKTYEFTLKDGLKWSDGEALTAS
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEC
DVEFSVKLALKASVINGIFPSTFTKIEGAKDFKDDKADKISGLTVDGNKVTFKLTAPVGD
CCEEEEEEEEEHHHHHCCCCCHHHHCCCCCCCCCCCHHHCCCEEECCCEEEEEEECCCCH
FEQMMTQFFILPKHKLESENPLELNNSSFWTAPVTSGMYKVKEISAGNFLEYDKNENYEN
HHHHHHHHHCCCHHHCCCCCCCEECCCCEEECCCCCCCEEEEEECCCCCEECCCCCCCCC
EKPKFDKVVFNYISDPVLALQDGKSYFYSTNKPQEISQLDAVSTLSKKPIDILFYRYFIA
CCCHHHHHHHHHHCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
NLAGVEGNGDSLIANPKVREAILYAINRDELAKSVFSGIADVNNTGVPSSLEAHLKSANK
HHCCCCCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
FEYNPEKAKQLLKEAKYDNSRNLILAYYYKDQASQDFMQAVSYQLNEVGIKNEVVQITSD
CCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
ATTGLFKTRKYDLAYKGLSSFGYETWYGEYSSTNTNFKNITNGETSFDELSKKLSETSDV
CCCCHHHHCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KERNKILASLQKLEQEKLLKLNLFTFKNFLYLNTEKVLIPDDVQFGNPFYKFDYKFEKWD
HHHHHHHHHHHHHHHHHHHEEEHEEEEEEEEECCCEEECCCCCCCCCCEEEEEEEEECCC
AK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA