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The map label for this gene is yybA [H]

Identifier: 116493406

GI number: 116493406

Start: 1657672

End: 1658124

Strand: Reverse

Name: yybA [H]

Synonym: PEPE_1678

Alternate gene names: 116493406

Gene position: 1658124-1657672 (Counterclockwise)

Preceding gene: 116493407

Following gene: 116493405

Centisome position: 90.49

GC content: 36.87

Gene sequence:

>453_bases
ATGGAAGATATTTTACGATCAATTGGATCAATTTCAAGAGAATTGGATTCGATTGCTAATATTGAATTTAAAGAATTAAA
TTTAACCAAAGGCAAGTATTTATATTTGGTTCGAATATGTGAAAATCCAGGAATTATCCAGGGTGAATTAGCTGAAAAAA
TTCGAGTTGATCGGACAACCGCAGCTCGAGCCGTAATGAAGTTGGAAAAGGATGGATTTATTACACGTGGAGCTGATCGG
GACAATCATAAGATTAAACGTCTATATCCCACTGAACAAGGTAAGGCAGTATATCCAACGATTAAACGCGAAAATAGCTA
TTCGAGTAGAATGGCGCTAGCAGGATTTACGGACGCGGAAGCTACAGCATTGAAAGCAATGCTGGAGAAAGTTGAACGAA
ATGTTAGTATCGACTGGAACTATGTAAAAAGTGGTCATCATAGAAAATATTGA

Upstream 100 bases:

>100_bases
TTTAAATTTAATTGTGGAACAAATCATACGAGCAATCAAAAAATAATTTTGTTGTATTTGCAACTAAATTAAAGTAAAAT
ACTCTCAGAGGGAAGTAATT

Downstream 100 bases:

>100_bases
GGTGAATTGAATGACAATTGATATTCAAAAAGTACGAGTTGAAGAAGTAGAAGCGTTACAAAAGATAAGTATTGAGACTT
TTGGAGATACTTTTGGCGCA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MEDILRSIGSISRELDSIANIEFKELNLTKGKYLYLVRICENPGIIQGELAEKIRVDRTTAARAVMKLEKDGFITRGADR
DNHKIKRLYPTEQGKAVYPTIKRENSYSSRMALAGFTDAEATALKAMLEKVERNVSIDWNYVKSGHHRKY

Sequences:

>Translated_150_residues
MEDILRSIGSISRELDSIANIEFKELNLTKGKYLYLVRICENPGIIQGELAEKIRVDRTTAARAVMKLEKDGFITRGADR
DNHKIKRLYPTEQGKAVYPTIKRENSYSSRMALAGFTDAEATALKAMLEKVERNVSIDWNYVKSGHHRKY
>Mature_150_residues
MEDILRSIGSISRELDSIANIEFKELNLTKGKYLYLVRICENPGIIQGELAEKIRVDRTTAARAVMKLEKDGFITRGADR
DNHKIKRLYPTEQGKAVYPTIKRENSYSSRMALAGFTDAEATALKAMLEKVERNVSIDWNYVKSGHHRKY

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17151; Mature: 17151

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDILRSIGSISRELDSIANIEFKELNLTKGKYLYLVRICENPGIIQGELAEKIRVDRTT
CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCEEEHHHHHHHHCCHHH
AARAVMKLEKDGFITRGADRDNHKIKRLYPTEQGKAVYPTIKRENSYSSRMALAGFTDAE
HHHHHHHHHCCCCEECCCCCCCCEEEEECCCCCCCEECCEEECCCCCCCEEEEECCCCHH
ATALKAMLEKVERNVSIDWNYVKSGHHRKY
HHHHHHHHHHHHCCCCCCCHHCCCCCCCCC
>Mature Secondary Structure
MEDILRSIGSISRELDSIANIEFKELNLTKGKYLYLVRICENPGIIQGELAEKIRVDRTT
CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCEEEHHHHHHHHCCHHH
AARAVMKLEKDGFITRGADRDNHKIKRLYPTEQGKAVYPTIKRENSYSSRMALAGFTDAE
HHHHHHHHHCCCCEECCCCCCCCEEEEECCCCCCCEECCEEECCCCCCCEEEEECCCCHH
ATALKAMLEKVERNVSIDWNYVKSGHHRKY
HHHHHHHHHHHHCCCCCCCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]