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The map label for this gene is ycdC [C]

Identifier: 116493407

GI number: 116493407

Start: 1658179

End: 1658814

Strand: Reverse

Name: ycdC [C]

Synonym: PEPE_1679

Alternate gene names: 116493407

Gene position: 1658814-1658179 (Counterclockwise)

Preceding gene: 116493408

Following gene: 116493406

Centisome position: 90.53

GC content: 31.6

Gene sequence:

>636_bases
ATGAGTAGTGCAATCATATTTGATAATTATAAAACGTGGCTTGATGAGCAAAAGCTTCCTAAAGGTCAGAAAAAAGCTCT
TTTAGCAGGGTTAGATTTATTTGCTAAACAGGGATTTAATGGAACTTCGACAGCCCAAATTGCTGAAAAAGCTGAAATTA
GTCAGGCAACTATATTTAAATACTTTAAGACTAAGCAAGATTTACTGATGGGAATTCTTAAACCGGTATTTATAAATTTA
TTTCCAGTTTTTCGGGATAGTTTTATTGATGAATTAAGGCAGTTCACTGACTTGGAAGATATGGTACGTTTTTTTGTTTA
TAACCGTTATCAATTTGTACGAGACAATGAAGACGCAATTCTAATTTTAATTACAGAGTTGCTAACTAATCGTGATATTC
GAGATTTATTTTTTGGAGTGATAAATGAACCTGGAAAATCAGTCATTGAAAATGTAAGAGAGAACTTAAATAAAACAGGA
CAATTACGACCTGAATTGGATTTTCCAGCCGTAATGAGAATCATGATTGGACAGATTTTTATTTATTTTGTTCAGCATCG
ATTCATCGGTAATTCAGACGAAACACGAGATTTAAATTTAATTGTGGAACAAATCATACGAGCAATCAAAAAATAA

Upstream 100 bases:

>100_bases
TTCAGCTTTGGGGGGAGATATTGGAGTGTTATTAATTTTTCTAGTTATCTTAACTATTTTAAATATCGTTGGATTGAAAC
GATATCGGAAGGTGTAAATA

Downstream 100 bases:

>100_bases
TTTTGTTGTATTTGCAACTAAATTAAAGTAAAATACTCTCAGAGGGAAGTAATTATGGAAGATATTTTACGATCAATTGG
ATCAATTTCAAGAGAATTGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcription Regulator; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSSAIIFDNYKTWLDEQKLPKGQKKALLAGLDLFAKQGFNGTSTAQIAEKAEISQATIFKYFKTKQDLLMGILKPVFINL
FPVFRDSFIDELRQFTDLEDMVRFFVYNRYQFVRDNEDAILILITELLTNRDIRDLFFGVINEPGKSVIENVRENLNKTG
QLRPELDFPAVMRIMIGQIFIYFVQHRFIGNSDETRDLNLIVEQIIRAIKK

Sequences:

>Translated_211_residues
MSSAIIFDNYKTWLDEQKLPKGQKKALLAGLDLFAKQGFNGTSTAQIAEKAEISQATIFKYFKTKQDLLMGILKPVFINL
FPVFRDSFIDELRQFTDLEDMVRFFVYNRYQFVRDNEDAILILITELLTNRDIRDLFFGVINEPGKSVIENVRENLNKTG
QLRPELDFPAVMRIMIGQIFIYFVQHRFIGNSDETRDLNLIVEQIIRAIKK
>Mature_210_residues
SSAIIFDNYKTWLDEQKLPKGQKKALLAGLDLFAKQGFNGTSTAQIAEKAEISQATIFKYFKTKQDLLMGILKPVFINLF
PVFRDSFIDELRQFTDLEDMVRFFVYNRYQFVRDNEDAILILITELLTNRDIRDLFFGVINEPGKSVIENVRENLNKTGQ
LRPELDFPAVMRIMIGQIFIYFVQHRFIGNSDETRDLNLIVEQIIRAIKK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24613; Mature: 24482

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAIIFDNYKTWLDEQKLPKGQKKALLAGLDLFAKQGFNGTSTAQIAEKAEISQATIFK
CCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YFKTKQDLLMGILKPVFINLFPVFRDSFIDELRQFTDLEDMVRFFVYNRYQFVRDNEDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCEE
LILITELLTNRDIRDLFFGVINEPGKSVIENVRENLNKTGQLRPELDFPAVMRIMIGQIF
EEEHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
IYFVQHRFIGNSDETRDLNLIVEQIIRAIKK
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSAIIFDNYKTWLDEQKLPKGQKKALLAGLDLFAKQGFNGTSTAQIAEKAEISQATIFK
CCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YFKTKQDLLMGILKPVFINLFPVFRDSFIDELRQFTDLEDMVRFFVYNRYQFVRDNEDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCEE
LILITELLTNRDIRDLFFGVINEPGKSVIENVRENLNKTGQLRPELDFPAVMRIMIGQIF
EEEHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
IYFVQHRFIGNSDETRDLNLIVEQIIRAIKK
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA