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The map label for this gene is ybeY [C]

Identifier: 116492868

GI number: 116492868

Start: 1105907

End: 1106377

Strand: Reverse

Name: ybeY [C]

Synonym: PEPE_1106

Alternate gene names: 116492868

Gene position: 1106377-1105907 (Counterclockwise)

Preceding gene: 116492869

Following gene: 116492867

Centisome position: 60.38

GC content: 33.12

Gene sequence:

>471_bases
ATGGATATTCAAACATTTGATCATACTAAGGAAGAAAATCCTAAAAATCTCGAATTAATTACCGATATTCTTGAATTTGC
TGGAAATTATTTGCATTTAGATGAAGAAACGGAAATTTCAGTAACATTAATGCATAATGATGAAATACATCAAATTAATA
AAGAGTATCGAAACGTTGATCGTCCAACTGATGTAATTAGCTTTGCAATCAACGATGCAGATGAGGATATTATTATGGAT
CCTGAAATGGCGGAGGAAATTCCGGCAAATATCGGAGATTTGATGATTTCAGTTGATAAAGTTGCTGAACAAGCTGAATT
TTTGGGTCATTCTTATGAGCGTGAATTAGGCTTTTTATGTGTTCATGGTTTCCTTCATTTAAATGGATATGACCATATGG
AAAAAGAAGACCAAGAAAAGATGTTCCCCCTTCAAAAAGAAATTATGAATGCCTATGGCCTCAAGCGATAA

Upstream 100 bases:

>100_bases
TTGAATTCGTTAACTTTACAGCTAACGACGTTATTCGTCATCCGGTAGTGGCTAAGATTGTACAAGCCTACGATGACAAA
GAAGCGAAAGGATAAATCTG

Downstream 100 bases:

>100_bases
GCATCAAACGAAAAAAAATCGTTCAATCTTCCAATCTGTAGGCCACGCGGGCCATGGATTGTGGGAAGTGTTTAATACTG
AACGTAATTTCCGTTATCAC

Product: metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MDIQTFDHTKEENPKNLELITDILEFAGNYLHLDEETEISVTLMHNDEIHQINKEYRNVDRPTDVISFAINDADEDIIMD
PEMAEEIPANIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMEKEDQEKMFPLQKEIMNAYGLKR

Sequences:

>Translated_156_residues
MDIQTFDHTKEENPKNLELITDILEFAGNYLHLDEETEISVTLMHNDEIHQINKEYRNVDRPTDVISFAINDADEDIIMD
PEMAEEIPANIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMEKEDQEKMFPLQKEIMNAYGLKR
>Mature_156_residues
MDIQTFDHTKEENPKNLELITDILEFAGNYLHLDEETEISVTLMHNDEIHQINKEYRNVDRPTDVISFAINDADEDIIMD
PEMAEEIPANIGDLMISVDKVAEQAEFLGHSYERELGFLCVHGFLHLNGYDHMEKEDQEKMFPLQKEIMNAYGLKR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=122, Percent_Identity=35.2459016393443, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PEDPA (Q03F61)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804603.1
- ProteinModelPortal:   Q03F61
- SMR:   Q03F61
- STRING:   Q03F61
- GeneID:   4417041
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1106
- NMPDR:   fig|278197.10.peg.970
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   LNGYDHM
- PhylomeDB:   Q03F61
- BioCyc:   PPEN278197:PEPE_1106-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18156; Mature: 18156

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIQTFDHTKEENPKNLELITDILEFAGNYLHLDEETEISVTLMHNDEIHQINKEYRNVD
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCHHHHHHHHHHCCC
RPTDVISFAINDADEDIIMDPEMAEEIPANIGDLMISVDKVAEQAEFLGHSYERELGFLC
CCHHHHHEEECCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VHGFLHLNGYDHMEKEDQEKMFPLQKEIMNAYGLKR
HHHHHEECCCCCCCHHHHHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure
MDIQTFDHTKEENPKNLELITDILEFAGNYLHLDEETEISVTLMHNDEIHQINKEYRNVD
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCEEEEEEEECCHHHHHHHHHHCCC
RPTDVISFAINDADEDIIMDPEMAEEIPANIGDLMISVDKVAEQAEFLGHSYERELGFLC
CCHHHHHEEECCCCCCEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VHGFLHLNGYDHMEKEDQEKMFPLQKEIMNAYGLKR
HHHHHEECCCCCCCHHHHHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA