| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is pyk [H]
Identifier: 116492854
GI number: 116492854
Start: 1086542
End: 1088305
Strand: Reverse
Name: pyk [H]
Synonym: PEPE_1092
Alternate gene names: 116492854
Gene position: 1088305-1086542 (Counterclockwise)
Preceding gene: 116492855
Following gene: 116492852
Centisome position: 59.39
GC content: 39.29
Gene sequence:
>1764_bases ATGAAGAAAACCAAAATCGTTTCAACACTTGGTCCTGCAAGTACTTCTGTTGACACAATTGTTAAATTAATTGAAGCCGG TGCTAATGTATTCCGCTTTAACTTTTCACATGGTGACCATGAAGAACATCTAGGTCGTTATAACATGGTTAAAGAAGCAG AAAAGATTACTGGCAAGTCAGTAGGTATTTTGCTTGATACAAAGGGTGCTGAAATCCGTACAACTCCACAAAAAGATGGT AACCAAGAATATCACACAAATGATAAGGTTCGCATCTCAATGGATGACACTTTGGAAACAACAAAAGAAAAGATTGCTGT TACATATGATGGACTTTTTGATGACGTTCATGTTGGTGGACACGTTCTTTTTGATGATGGACTTCTTGATTTTAAGATTG ACGAAAAAGATGAAGAAAACCGCGAATTAGTTGCTCATGCAACTAACAATGGTGTTCTTGGATCACGTAAGGGTACAAAT GCTCCTGGTGTTTCAATTAACTTACCTGGTATTACTGAAAAAGATGCTGATGATATTCGTTTTGGTCTTGAATCAATGAA CATCAACTTCATCGCTGCAAGTTTCGTACGTAAGCCACAAGACGTTCTTGAAATTCGTGAATTGTTGGAAGAAAAGAACA TGGAAGATGTTCAAATTTTCCCTAAGATCGAATCACAAGAAGGTATTGACAACACAGACGAAATCTTGAAAGTTTCAGAT GGTATTATGATTGCTCGTGGTGACATGGGTGTTGAAATTCCAGCTGAAAATGTTCCTTTGGTACAAAAGACATTGATCAA GAAGTGTAATGCAGTTGGTTTGCCTGTTATCACAGCAACTCAAATGCTTGACTCAATGATCGAAAACCCACGTCCAACAC GTGCTGAAGCTTCTGACGTTGCTAATGCTGTTTGGGATGGTACAGATGCTACTATGCTTTCTGGTGAAAGTGCTAATGGT GACTACCCTGTTGAAGCTGTTGCTACAATGGCTAAGATTGACGAAAAAGCTGAAAATGCTATGGCTGAAGACGGAAATCT TCAAATCAACACATTTGATCAAAGTGATGTTACAGAAACAATTAGTGCTGCTGTTGCTCGTGCTGCTAAGAACCTTGGTG TTAAGACTATCGTTGCTGCAACACAATCAGGTTACACAGCTCGTATGATTTCTAAGTATCGTCCAGATGCTGACATTCTT GCAATCACATTTGACGAACGTGTTCGTCGCGGTTTGATGGTTAACTGGGGTGTACACCCAATCATCGCTGACCGTCCATC AACAACTGATGAAATGTTTGAACTAGCTGCTAACAAAGCTGTAGATCTTGGTCTTGCTAAAGAAGGAGACTTGATTCTTG TTGTTGCTGGTGTTCCAGTTGGCGAAAGTGGAACAACAAACATCATGAAGTTACAACTAATTGGTTCAAAGCTTGCTTCT GGTCAAGGTGTTGGTGATGAAACAGTTATTGGTAAAGCAGTTGTTGCTACATCAGCTGATGAAGCTAACAAAAAAGCTGT TGAAGGCGGAGTACTTGTTACAAAGACAACTGACAAAGACTATCTACCAGCAATTGAAAAATCAAGTGCTTTAGTAGTTG AAAATGGTGGTTTGACATCACACGCTGCAGTAGTTGGTATTTCAATGGGAATTCCTGTTATTGTTGGTGTACAAAACGCA ACTTCAATCCTTTCAGATGATGAATTGATTACAGTTGACTCACGTCGTGGTATTATCTACCATGGTGCATCAAACTCACT ATAA
Upstream 100 bases:
>100_bases CCAATTAAGTGAAGATTTATCATTCTAGAGTTCTATTAATATTTGGATAAAATGACTTAAGAAGTCTTTTATAATTTAAA ATCAAGGGAGAGATTCTGTA
Downstream 100 bases:
>100_bases AAATTTAATTTAAATTTTTAAAACCTGGAACATTATATGTTCTAGGTTTTTTTGTTTGGCAGAATGAAAGTTGAATTTAG ACTGTTAGGGTTCTAGATTT
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MKKTKIVSTLGPASTSVDTIVKLIEAGANVFRFNFSHGDHEEHLGRYNMVKEAEKITGKSVGILLDTKGAEIRTTPQKDG NQEYHTNDKVRISMDDTLETTKEKIAVTYDGLFDDVHVGGHVLFDDGLLDFKIDEKDEENRELVAHATNNGVLGSRKGTN APGVSINLPGITEKDADDIRFGLESMNINFIAASFVRKPQDVLEIRELLEEKNMEDVQIFPKIESQEGIDNTDEILKVSD GIMIARGDMGVEIPAENVPLVQKTLIKKCNAVGLPVITATQMLDSMIENPRPTRAEASDVANAVWDGTDATMLSGESANG DYPVEAVATMAKIDEKAENAMAEDGNLQINTFDQSDVTETISAAVARAAKNLGVKTIVAATQSGYTARMISKYRPDADIL AITFDERVRRGLMVNWGVHPIIADRPSTTDEMFELAANKAVDLGLAKEGDLILVVAGVPVGESGTTNIMKLQLIGSKLAS GQGVGDETVIGKAVVATSADEANKKAVEGGVLVTKTTDKDYLPAIEKSSALVVENGGLTSHAAVVGISMGIPVIVGVQNA TSILSDDELITVDSRRGIIYHGASNSL
Sequences:
>Translated_587_residues MKKTKIVSTLGPASTSVDTIVKLIEAGANVFRFNFSHGDHEEHLGRYNMVKEAEKITGKSVGILLDTKGAEIRTTPQKDG NQEYHTNDKVRISMDDTLETTKEKIAVTYDGLFDDVHVGGHVLFDDGLLDFKIDEKDEENRELVAHATNNGVLGSRKGTN APGVSINLPGITEKDADDIRFGLESMNINFIAASFVRKPQDVLEIRELLEEKNMEDVQIFPKIESQEGIDNTDEILKVSD GIMIARGDMGVEIPAENVPLVQKTLIKKCNAVGLPVITATQMLDSMIENPRPTRAEASDVANAVWDGTDATMLSGESANG DYPVEAVATMAKIDEKAENAMAEDGNLQINTFDQSDVTETISAAVARAAKNLGVKTIVAATQSGYTARMISKYRPDADIL AITFDERVRRGLMVNWGVHPIIADRPSTTDEMFELAANKAVDLGLAKEGDLILVVAGVPVGESGTTNIMKLQLIGSKLAS GQGVGDETVIGKAVVATSADEANKKAVEGGVLVTKTTDKDYLPAIEKSSALVVENGGLTSHAAVVGISMGIPVIVGVQNA TSILSDDELITVDSRRGIIYHGASNSL >Mature_587_residues MKKTKIVSTLGPASTSVDTIVKLIEAGANVFRFNFSHGDHEEHLGRYNMVKEAEKITGKSVGILLDTKGAEIRTTPQKDG NQEYHTNDKVRISMDDTLETTKEKIAVTYDGLFDDVHVGGHVLFDDGLLDFKIDEKDEENRELVAHATNNGVLGSRKGTN APGVSINLPGITEKDADDIRFGLESMNINFIAASFVRKPQDVLEIRELLEEKNMEDVQIFPKIESQEGIDNTDEILKVSD GIMIARGDMGVEIPAENVPLVQKTLIKKCNAVGLPVITATQMLDSMIENPRPTRAEASDVANAVWDGTDATMLSGESANG DYPVEAVATMAKIDEKAENAMAEDGNLQINTFDQSDVTETISAAVARAAKNLGVKTIVAATQSGYTARMISKYRPDADIL AITFDERVRRGLMVNWGVHPIIADRPSTTDEMFELAANKAVDLGLAKEGDLILVVAGVPVGESGTTNIMKLQLIGSKLAS GQGVGDETVIGKAVVATSADEANKKAVEGGVLVTKTTDKDYLPAIEKSSALVVENGGLTSHAAVVGISMGIPVIVGVQNA TSILSDDELITVDSRRGIIYHGASNSL
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PEP- utilizing enzyme family [H]
Homologues:
Organism=Homo sapiens, GI10835121, Length=490, Percent_Identity=41.2244897959184, Blast_Score=345, Evalue=9e-95, Organism=Homo sapiens, GI33286418, Length=495, Percent_Identity=40.8080808080808, Blast_Score=344, Evalue=1e-94, Organism=Homo sapiens, GI32967597, Length=490, Percent_Identity=41.2244897959184, Blast_Score=344, Evalue=1e-94, Organism=Homo sapiens, GI33286422, Length=490, Percent_Identity=40.8163265306122, Blast_Score=343, Evalue=2e-94, Organism=Homo sapiens, GI33286420, Length=490, Percent_Identity=40.8163265306122, Blast_Score=343, Evalue=2e-94, Organism=Homo sapiens, GI310128732, Length=291, Percent_Identity=42.2680412371134, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI310128730, Length=291, Percent_Identity=42.2680412371134, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI310128736, Length=239, Percent_Identity=38.0753138075314, Blast_Score=152, Evalue=6e-37, Organism=Homo sapiens, GI310128734, Length=239, Percent_Identity=38.0753138075314, Blast_Score=152, Evalue=6e-37, Organism=Homo sapiens, GI310128738, Length=218, Percent_Identity=37.1559633027523, Blast_Score=132, Evalue=1e-30, Organism=Escherichia coli, GI1787965, Length=476, Percent_Identity=46.8487394957983, Blast_Score=410, Evalue=1e-115, Organism=Escherichia coli, GI1788160, Length=481, Percent_Identity=37.8378378378378, Blast_Score=261, Evalue=8e-71, Organism=Escherichia coli, GI1787994, Length=165, Percent_Identity=32.1212121212121, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17544584, Length=483, Percent_Identity=40.9937888198758, Blast_Score=353, Evalue=1e-97, Organism=Caenorhabditis elegans, GI17506829, Length=488, Percent_Identity=42.4180327868852, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI71984413, Length=488, Percent_Identity=42.4180327868852, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI17506831, Length=488, Percent_Identity=42.4180327868852, Blast_Score=323, Evalue=2e-88, Organism=Caenorhabditis elegans, GI71984406, Length=488, Percent_Identity=42.4180327868852, Blast_Score=323, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6319279, Length=487, Percent_Identity=40.041067761807, Blast_Score=330, Evalue=4e-91, Organism=Saccharomyces cerevisiae, GI6324923, Length=493, Percent_Identity=40.1622718052738, Blast_Score=312, Evalue=1e-85, Organism=Drosophila melanogaster, GI24648964, Length=488, Percent_Identity=40.3688524590164, Blast_Score=324, Evalue=1e-88, Organism=Drosophila melanogaster, GI28571814, Length=488, Percent_Identity=40.3688524590164, Blast_Score=323, Evalue=2e-88, Organism=Drosophila melanogaster, GI24648966, Length=414, Percent_Identity=41.7874396135266, Blast_Score=296, Evalue=2e-80, Organism=Drosophila melanogaster, GI24581235, Length=480, Percent_Identity=34.375, Blast_Score=259, Evalue=4e-69, Organism=Drosophila melanogaster, GI24646914, Length=327, Percent_Identity=38.5321100917431, Blast_Score=206, Evalue=4e-53,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008279 - InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 62845; Mature: 62845
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTKIVSTLGPASTSVDTIVKLIEAGANVFRFNFSHGDHEEHLGRYNMVKEAEKITGKS CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCHHHHHHHHHHHCCCE VGILLDTKGAEIRTTPQKDGNQEYHTNDKVRISMDDTLETTKEKIAVTYDGLFDDVHVGG EEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCHHHHCHHEEEEEECCCCCCEECCC HVLFDDGLLDFKIDEKDEENRELVAHATNNGVLGSRKGTNAPGVSINLPGITEKDADDIR EEEEECCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH FGLESMNINFIAASFVRKPQDVLEIRELLEEKNMEDVQIFPKIESQEGIDNTDEILKVSD HHHHHCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHEEECC GIMIARGDMGVEIPAENVPLVQKTLIKKCNAVGLPVITATQMLDSMIENPRPTRAEASDV CEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH ANAVWDGTDATMLSGESANGDYPVEAVATMAKIDEKAENAMAEDGNLQINTFDQSDVTET HHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH ISAAVARAAKNLGVKTIVAATQSGYTARMISKYRPDADILAITFDERVRRGLMVNWGVHP HHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEHHHHHCCEEEECCCCE IIADRPSTTDEMFELAANKAVDLGLAKEGDLILVVAGVPVGESGTTNIMKLQLIGSKLAS EECCCCCCHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEHHHHCC GQGVGDETVIGKAVVATSADEANKKAVEGGVLVTKTTDKDYLPAIEKSSALVVENGGLTS CCCCCCCHHHCEEEEEECCCCCCHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCC HAAVVGISMGIPVIVGVQNATSILSDDELITVDSRRGIIYHGASNSL CCEEEEEECCCCEEEECCCHHHHCCCCCEEEEECCCCEEEECCCCCC >Mature Secondary Structure MKKTKIVSTLGPASTSVDTIVKLIEAGANVFRFNFSHGDHEEHLGRYNMVKEAEKITGKS CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCHHHHHHHHHHHCCCE VGILLDTKGAEIRTTPQKDGNQEYHTNDKVRISMDDTLETTKEKIAVTYDGLFDDVHVGG EEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEECCHHHHCHHEEEEEECCCCCCEECCC HVLFDDGLLDFKIDEKDEENRELVAHATNNGVLGSRKGTNAPGVSINLPGITEKDADDIR EEEEECCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH FGLESMNINFIAASFVRKPQDVLEIRELLEEKNMEDVQIFPKIESQEGIDNTDEILKVSD HHHHHCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHEEECC GIMIARGDMGVEIPAENVPLVQKTLIKKCNAVGLPVITATQMLDSMIENPRPTRAEASDV CEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH ANAVWDGTDATMLSGESANGDYPVEAVATMAKIDEKAENAMAEDGNLQINTFDQSDVTET HHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHH ISAAVARAAKNLGVKTIVAATQSGYTARMISKYRPDADILAITFDERVRRGLMVNWGVHP HHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHCCCCCCEEEEEEHHHHHCCEEEECCCCE IIADRPSTTDEMFELAANKAVDLGLAKEGDLILVVAGVPVGESGTTNIMKLQLIGSKLAS EECCCCCCHHHHHHHHHCCCEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEHHHHCC GQGVGDETVIGKAVVATSADEANKKAVEGGVLVTKTTDKDYLPAIEKSSALVVENGGLTS CCCCCCCHHHCEEEEEECCCCCCHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCC HAAVVGISMGIPVIVGVQNATSILSDDELITVDSRRGIIYHGASNSL CCEEEEEECCCCEEEECCCHHHHCCCCCEEEEECCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8755908; 8366023; 8274531 [H]