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The map label for this gene is yfmR [H]

Identifier: 116492834

GI number: 116492834

Start: 1067236

End: 1069113

Strand: Reverse

Name: yfmR [H]

Synonym: PEPE_1071

Alternate gene names: 116492834

Gene position: 1069113-1067236 (Counterclockwise)

Preceding gene: 116492835

Following gene: 116492833

Centisome position: 58.35

GC content: 34.13

Gene sequence:

>1878_bases
ATGAAAATACTAAAAGGTAAGAATCTAACCAAAACTTACGGTGAAAAGAAGCTGTTTAACTCGATTAATTTTGTAATCAA
TGAACACGATCGAGTTGGACTAATTGGAACTAATGGATCAGGAAAAACGAATTTACTTAATGCCGTTTCGAATCTTGATC
CCGCTGATTCAGGAACAATTGAAACACCAAACGATTACCGTATTGCATATCTTAAACAAAGTGAAGAAATTAGTCAGTTT
GAAACGGTACGTGAATTTATTTACAGCGGGGATCAACATGTATTTCAAGTAATTAAACACTACGAAGAAATCTTAGAACA
ATATACTAATAATCCAACTTCATCAACGCTATTTGAAAAATTTACTAAACTTGAAAATGAAATGAATCAACTGGATGCTT
GGAATACGGAAAGCAATATTAAAACCATTTTGACGCAATTACATGTTGATATGCTAGATGAATCTATCCATCATCTTTCG
GGTGGACAAGTTAAGCGAATCGCTTTAGCACAGGCATTGTTAGAACCAGCAGATTTATTGATTTTAGATGAACCTACTAA
CCATTTAGATTTTGATTCAATTGAGTGGCTGGAAAAATACCTTGCTGATTATAAAGGCGCATTACTATTGGTTACCCATG
ATCGATATTTCTTAGATCGAGTTACCAATCGAATTTGGGAATTAAGTTACGGAGACCTTTTTGAGTACGTCGGTAACTAT
GAAAAATATGTTGAACAAAAAGCGGTTCGTGATGAGCAAAACGAAGCTAGTAAACAAAAAGAGTACAAACTATATAAGCA
AGAACTTGAATGGATGAAACGTGGACCCAAAGCACGTGGAACTAAACAACAAGCGCGAATTAACCATTTTGAAAAGTTAG
ACCAAGCTGTACATGCGCCTAAAGAGGTTGATCAAGACCTTGAGATTGGTCTAACACAACAAAGATTGGGCAAAAAAGTA
ATTGAAATCAATGACTTAGATTTAGAAGTTGGCGACCATCAAATTATGAAGGATTTTTCTAAGTTAATTCAGGCGGGTGA
CCGAATCGGAATAACAGGAGCCAACGGCGCAGGTAAATCTTCATTTTTGAATGCGATTGCGGGAGTATTGCCTATTCAGG
GTGGGAAAATTGAAATTGGCGAAACTGTTAAAATTGGGTATTATACTCAAAAAATTGAACCCATACCAGAAGATAAACGG
GTAATTAATTACCTAAAAGAAGTTGGACAAGAAGTAATCAATAAAGATGGTGAAAAAATTAGTGTCACTAGTCTTTTAGA
ACAATTCTTATTTCCAAGTTTTTTACATGGTAGTTTAATTAAAAAGCTATCTGGTGGTGAAAAACGGCGTCTATTTTTAA
TTAAGATTTTAATGGAACAACCTAATGTACTATTGTTAGATGAACCCACTAATGACTTGGATATTGCTACTTTAACTGTT
TTAGAGAGTTATTTAAAAACCTTCAAAGGTACAGTCCTTACCGTGTCCCATGATCGGTATTTCTTAGATAAAGTTAGTGA
CCAATTACTAATATTTGATGGAAATGCTAAAGTTGAAAAATATACGGGCTCGATCAGTGACTATTTAAAACAAAACGTAG
TACAATCAAGTAAAATTAAAAGTACTCCTAAGTCAGTTGAACAAGTTGAAGCTCCTAAAAAGAAAAAAAGGACGTATTCA
GAAGAAAAAGAATGGCAGACAATTGAAACTGAAATCGAAAAGTTAGAACAAAAGTCCACATCTGTGGAGGAACAAATGAG
CGAATGTGCTGCTGATTACGGAAAATTAGCAGAATTGCAAAAAGAATTAAATGAAATTTCGGACCAATTAGAAGAAAAAA
TGGCAAGATGGGAATACTTAGAAAGTTTCGAAGAATAG

Upstream 100 bases:

>100_bases
TTTTAAACCGGTTAAAATTAATGGTTATTAATGATGAACTGAAAAACGAGTCCTTAGCGCTTTTGAATGCAGTAAATAAG
TTACAGAAAGATGATTAAAT

Downstream 100 bases:

>100_bases
GGGAAATTTAATATGCTTGAAGAACAATACCTTAATTTGGAAAGATATGTTTTGGAAAATGGGCATCTCAAAGGAGACCG
TACCCAAACTGGTACCCTAA

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MKILKGKNLTKTYGEKKLFNSINFVINEHDRVGLIGTNGSGKTNLLNAVSNLDPADSGTIETPNDYRIAYLKQSEEISQF
ETVREFIYSGDQHVFQVIKHYEEILEQYTNNPTSSTLFEKFTKLENEMNQLDAWNTESNIKTILTQLHVDMLDESIHHLS
GGQVKRIALAQALLEPADLLILDEPTNHLDFDSIEWLEKYLADYKGALLLVTHDRYFLDRVTNRIWELSYGDLFEYVGNY
EKYVEQKAVRDEQNEASKQKEYKLYKQELEWMKRGPKARGTKQQARINHFEKLDQAVHAPKEVDQDLEIGLTQQRLGKKV
IEINDLDLEVGDHQIMKDFSKLIQAGDRIGITGANGAGKSSFLNAIAGVLPIQGGKIEIGETVKIGYYTQKIEPIPEDKR
VINYLKEVGQEVINKDGEKISVTSLLEQFLFPSFLHGSLIKKLSGGEKRRLFLIKILMEQPNVLLLDEPTNDLDIATLTV
LESYLKTFKGTVLTVSHDRYFLDKVSDQLLIFDGNAKVEKYTGSISDYLKQNVVQSSKIKSTPKSVEQVEAPKKKKRTYS
EEKEWQTIETEIEKLEQKSTSVEEQMSECAADYGKLAELQKELNEISDQLEEKMARWEYLESFEE

Sequences:

>Translated_625_residues
MKILKGKNLTKTYGEKKLFNSINFVINEHDRVGLIGTNGSGKTNLLNAVSNLDPADSGTIETPNDYRIAYLKQSEEISQF
ETVREFIYSGDQHVFQVIKHYEEILEQYTNNPTSSTLFEKFTKLENEMNQLDAWNTESNIKTILTQLHVDMLDESIHHLS
GGQVKRIALAQALLEPADLLILDEPTNHLDFDSIEWLEKYLADYKGALLLVTHDRYFLDRVTNRIWELSYGDLFEYVGNY
EKYVEQKAVRDEQNEASKQKEYKLYKQELEWMKRGPKARGTKQQARINHFEKLDQAVHAPKEVDQDLEIGLTQQRLGKKV
IEINDLDLEVGDHQIMKDFSKLIQAGDRIGITGANGAGKSSFLNAIAGVLPIQGGKIEIGETVKIGYYTQKIEPIPEDKR
VINYLKEVGQEVINKDGEKISVTSLLEQFLFPSFLHGSLIKKLSGGEKRRLFLIKILMEQPNVLLLDEPTNDLDIATLTV
LESYLKTFKGTVLTVSHDRYFLDKVSDQLLIFDGNAKVEKYTGSISDYLKQNVVQSSKIKSTPKSVEQVEAPKKKKRTYS
EEKEWQTIETEIEKLEQKSTSVEEQMSECAADYGKLAELQKELNEISDQLEEKMARWEYLESFEE
>Mature_625_residues
MKILKGKNLTKTYGEKKLFNSINFVINEHDRVGLIGTNGSGKTNLLNAVSNLDPADSGTIETPNDYRIAYLKQSEEISQF
ETVREFIYSGDQHVFQVIKHYEEILEQYTNNPTSSTLFEKFTKLENEMNQLDAWNTESNIKTILTQLHVDMLDESIHHLS
GGQVKRIALAQALLEPADLLILDEPTNHLDFDSIEWLEKYLADYKGALLLVTHDRYFLDRVTNRIWELSYGDLFEYVGNY
EKYVEQKAVRDEQNEASKQKEYKLYKQELEWMKRGPKARGTKQQARINHFEKLDQAVHAPKEVDQDLEIGLTQQRLGKKV
IEINDLDLEVGDHQIMKDFSKLIQAGDRIGITGANGAGKSSFLNAIAGVLPIQGGKIEIGETVKIGYYTQKIEPIPEDKR
VINYLKEVGQEVINKDGEKISVTSLLEQFLFPSFLHGSLIKKLSGGEKRRLFLIKILMEQPNVLLLDEPTNDLDIATLTV
LESYLKTFKGTVLTVSHDRYFLDKVSDQLLIFDGNAKVEKYTGSISDYLKQNVVQSSKIKSTPKSVEQVEAPKKKKRTYS
EEKEWQTIETEIEKLEQKSTSVEEQMSECAADYGKLAELQKELNEISDQLEEKMARWEYLESFEE

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=27.0676691729323, Blast_Score=185, Evalue=1e-46,
Organism=Homo sapiens, GI10947135, Length=535, Percent_Identity=28.411214953271, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI69354671, Length=535, Percent_Identity=28.411214953271, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI10947137, Length=546, Percent_Identity=28.021978021978, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI27881506, Length=546, Percent_Identity=28.2051282051282, Blast_Score=161, Evalue=2e-39,
Organism=Escherichia coli, GI1787182, Length=626, Percent_Identity=31.3099041533546, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI2367384, Length=518, Percent_Identity=34.9420849420849, Blast_Score=310, Evalue=2e-85,
Organism=Escherichia coli, GI1789751, Length=635, Percent_Identity=30.8661417322835, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=29.520295202952, Blast_Score=228, Evalue=6e-61,
Organism=Escherichia coli, GI87081782, Length=544, Percent_Identity=23.5294117647059, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=28.0334728033473, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=204, Percent_Identity=24.5098039215686, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=27.7551020408163, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1789672, Length=250, Percent_Identity=25.6, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787029, Length=239, Percent_Identity=28.8702928870293, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=227, Percent_Identity=24.2290748898678, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786698, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787712, Length=229, Percent_Identity=24.8908296943231, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786872, Length=232, Percent_Identity=25.4310344827586, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1786319, Length=183, Percent_Identity=28.9617486338798, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1790467, Length=278, Percent_Identity=25.1798561151079, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=538, Percent_Identity=26.7657992565056, Blast_Score=187, Evalue=1e-47,
Organism=Caenorhabditis elegans, GI17555318, Length=536, Percent_Identity=27.6119402985075, Blast_Score=175, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17553372, Length=534, Percent_Identity=28.2771535580524, Blast_Score=172, Evalue=3e-43,
Organism=Saccharomyces cerevisiae, GI6320874, Length=565, Percent_Identity=26.7256637168142, Blast_Score=179, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=26.508226691042, Blast_Score=169, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6324314, Length=383, Percent_Identity=26.8929503916449, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6325030, Length=391, Percent_Identity=26.5984654731458, Blast_Score=105, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6323278, Length=384, Percent_Identity=25.2604166666667, Blast_Score=102, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6320266, Length=515, Percent_Identity=22.5242718446602, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24666836, Length=536, Percent_Identity=30.0373134328358, Blast_Score=213, Evalue=3e-55,
Organism=Drosophila melanogaster, GI24641342, Length=564, Percent_Identity=28.7234042553192, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24642252, Length=548, Percent_Identity=27.3722627737226, Blast_Score=167, Evalue=1e-41,
Organism=Drosophila melanogaster, GI18859989, Length=548, Percent_Identity=27.3722627737226, Blast_Score=167, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 71634; Mature: 71634

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILKGKNLTKTYGEKKLFNSINFVINEHDRVGLIGTNGSGKTNLLNAVSNLDPADSGTI
CCCCCCCCCHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCC
ETPNDYRIAYLKQSEEISQFETVREFIYSGDQHVFQVIKHYEEILEQYTNNPTSSTLFEK
CCCCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FTKLENEMNQLDAWNTESNIKTILTQLHVDMLDESIHHLSGGQVKRIALAQALLEPADLL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE
ILDEPTNHLDFDSIEWLEKYLADYKGALLLVTHDRYFLDRVTNRIWELSYGDLFEYVGNY
EECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCH
EKYVEQKAVRDEQNEASKQKEYKLYKQELEWMKRGPKARGTKQQARINHFEKLDQAVHAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCH
KEVDQDLEIGLTQQRLGKKVIEINDLDLEVGDHQIMKDFSKLIQAGDRIGITGANGAGKS
HHCCCHHHCCCCHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
SFLNAIAGVLPIQGGKIEIGETVKIGYYTQKIEPIPEDKRVINYLKEVGQEVINKDGEKI
HHHHHHHHHHCCCCCEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
SVTSLLEQFLFPSFLHGSLIKKLSGGEKRRLFLIKILMEQPNVLLLDEPTNDLDIATLTV
EHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
LESYLKTFKGTVLTVSHDRYFLDKVSDQLLIFDGNAKVEKYTGSISDYLKQNVVQSSKIK
HHHHHHHHCCCEEEEECCHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHC
STPKSVEQVEAPKKKKRTYSEEKEWQTIETEIEKLEQKSTSVEEQMSECAADYGKLAELQ
CCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNEISDQLEEKMARWEYLESFEE
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKILKGKNLTKTYGEKKLFNSINFVINEHDRVGLIGTNGSGKTNLLNAVSNLDPADSGTI
CCCCCCCCCHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCC
ETPNDYRIAYLKQSEEISQFETVREFIYSGDQHVFQVIKHYEEILEQYTNNPTSSTLFEK
CCCCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
FTKLENEMNQLDAWNTESNIKTILTQLHVDMLDESIHHLSGGQVKRIALAQALLEPADLL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE
ILDEPTNHLDFDSIEWLEKYLADYKGALLLVTHDRYFLDRVTNRIWELSYGDLFEYVGNY
EECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHCCH
EKYVEQKAVRDEQNEASKQKEYKLYKQELEWMKRGPKARGTKQQARINHFEKLDQAVHAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCH
KEVDQDLEIGLTQQRLGKKVIEINDLDLEVGDHQIMKDFSKLIQAGDRIGITGANGAGKS
HHCCCHHHCCCCHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
SFLNAIAGVLPIQGGKIEIGETVKIGYYTQKIEPIPEDKRVINYLKEVGQEVINKDGEKI
HHHHHHHHHHCCCCCEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
SVTSLLEQFLFPSFLHGSLIKKLSGGEKRRLFLIKILMEQPNVLLLDEPTNDLDIATLTV
EHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
LESYLKTFKGTVLTVSHDRYFLDKVSDQLLIFDGNAKVEKYTGSISDYLKQNVVQSSKIK
HHHHHHHHCCCEEEEECCHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHC
STPKSVEQVEAPKKKKRTYSEEKEWQTIETEIEKLEQKSTSVEEQMSECAADYGKLAELQ
CCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNEISDQLEEKMARWEYLESFEE
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]