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The map label for this gene is ycfH [C]

Identifier: 116515153

GI number: 116515153

Start: 251985

End: 252779

Strand: Direct

Name: ycfH [C]

Synonym: BCc_220

Alternate gene names: 116515153

Gene position: 251985-252779 (Clockwise)

Preceding gene: 116515152

Following gene: 116515157

Centisome position: 60.52

GC content: 16.6

Gene sequence:

>795_bases
ATGTTTTTAATTGATACACATTGTCATATTCATAATATATGTCAATTAGATAAAAAAATGAATTTAGATAAAATTTTAAA
AAATGCTTATAAAAAAAATATAAGAGCATTTTTATCCGTATCAACTTCTATTTTAGATTTTTACAATTTATTGAAACTTA
CTAAAAATTATAATAATATTTTCTTATCTTGTGGTTTACATCCTAATTATTTTCATACAAATGAAGATCTCAAAAAATTA
AAAAAAAATATTAATAATAATAAAGTTATTGCTATTGGAGAAACTGGATTAGATTTTTTTAAATCAAAACAAAAAAAAAA
AAACCAAATAAAACTATTTGAATATCATTTACATCTATCTAAGAAAAAAAAAAAACCAATTATTATACATAATAGAAATT
CTGATAAAGAATTATTAAATATATTAATTTCTAAAAAAGAAAAATTATATTCTGGAATAATTCATTCCTTTACTGGAAAA
AAAAAATTTGCAAGAAAATTATTAGATTTAGGATTTTATATATCTTTTTCTGGTATAATAACATTTAAAAAATCTGAAAA
ACTAAGAGAAATTTTAAAATTTATACCATTAAATAGATTATTAATAGAAACAGATTCTCCTTACTTATCTCCCGAACCTT
ATAGAGGAAAAAAAAATCAACCATCATTTTTATATTTTATCGCTAAATGTATTCAAAAATATATAAAAATAGATTTTTTG
AAATTTATTAAAATACTAAAAAAAAATTTTTTAAGATTATTTCAATTAAAAAATAATATTTATTTTTTACAATAA

Upstream 100 bases:

>100_bases
TATTGATAAAAAATTAATTTTTACAGAACAAATTTTATTATTTTCAACTCTTTTATAAAAAGAAATTATATATTTAATAT
CTTTTAACAAGGAAATAAAA

Downstream 100 bases:

>100_bases
AATATAGTTTTTTTTATTAAAAAGTTTATAATAAATAAAAATTCTAAATTTAAATTAAGAAATTAATTTAAATTTACAAT
ATTTTATTAAAATTTTAATA

Product: YcfH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MFLIDTHCHIHNICQLDKKMNLDKILKNAYKKNIRAFLSVSTSILDFYNLLKLTKNYNNIFLSCGLHPNYFHTNEDLKKL
KKNINNNKVIAIGETGLDFFKSKQKKKNQIKLFEYHLHLSKKKKKPIIIHNRNSDKELLNILISKKEKLYSGIIHSFTGK
KKFARKLLDLGFYISFSGIITFKKSEKLREILKFIPLNRLLIETDSPYLSPEPYRGKKNQPSFLYFIAKCIQKYIKIDFL
KFIKILKKNFLRLFQLKNNIYFLQ

Sequences:

>Translated_264_residues
MFLIDTHCHIHNICQLDKKMNLDKILKNAYKKNIRAFLSVSTSILDFYNLLKLTKNYNNIFLSCGLHPNYFHTNEDLKKL
KKNINNNKVIAIGETGLDFFKSKQKKKNQIKLFEYHLHLSKKKKKPIIIHNRNSDKELLNILISKKEKLYSGIIHSFTGK
KKFARKLLDLGFYISFSGIITFKKSEKLREILKFIPLNRLLIETDSPYLSPEPYRGKKNQPSFLYFIAKCIQKYIKIDFL
KFIKILKKNFLRLFQLKNNIYFLQ
>Mature_264_residues
MFLIDTHCHIHNICQLDKKMNLDKILKNAYKKNIRAFLSVSTSILDFYNLLKLTKNYNNIFLSCGLHPNYFHTNEDLKKL
KKNINNNKVIAIGETGLDFFKSKQKKKNQIKLFEYHLHLSKKKKKPIIIHNRNSDKELLNILISKKEKLYSGIIHSFTGK
KKFARKLLDLGFYISFSGIITFKKSEKLREILKFIPLNRLLIETDSPYLSPEPYRGKKNQPSFLYFIAKCIQKYIKIDFL
KFIKILKKNFLRLFQLKNNIYFLQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=199, Percent_Identity=35.1758793969849, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI225903439, Length=180, Percent_Identity=37.2222222222222, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=27.3408239700375, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=26.9662921348315, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI226061614, Length=257, Percent_Identity=26.0700389105058, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI225903424, Length=230, Percent_Identity=28.695652173913, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=27.8969957081545, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=35.9073359073359, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI87082439, Length=225, Percent_Identity=29.7777777777778, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI48994985, Length=246, Percent_Identity=26.4227642276423, Blast_Score=114, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=266, Percent_Identity=25.5639097744361, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71980746, Length=267, Percent_Identity=26.5917602996255, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=214, Percent_Identity=28.5046728971963, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=295, Percent_Identity=25.4237288135593, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648690, Length=199, Percent_Identity=32.1608040201005, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24586117, Length=205, Percent_Identity=27.3170731707317, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI221330018, Length=205, Percent_Identity=27.3170731707317, Blast_Score=90, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31387; Mature: 31387

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIDTHCHIHNICQLDKKMNLDKILKNAYKKNIRAFLSVSTSILDFYNLLKLTKNYNNI
CEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FLSCGLHPNYFHTNEDLKKLKKNINNNKVIAIGETGLDFFKSKQKKKNQIKLFEYHLHLS
EEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEHEEEEHH
KKKKKPIIIHNRNSDKELLNILISKKEKLYSGIIHSFTGKKKFARKLLDLGFYISFSGII
HCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEE
TFKKSEKLREILKFIPLNRLLIETDSPYLSPEPYRGKKNQPSFLYFIAKCIQKYIKIDFL
EECCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KFIKILKKNFLRLFQLKNNIYFLQ
HHHHHHHHHHHHHHHHHCCEEEEC
>Mature Secondary Structure
MFLIDTHCHIHNICQLDKKMNLDKILKNAYKKNIRAFLSVSTSILDFYNLLKLTKNYNNI
CEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FLSCGLHPNYFHTNEDLKKLKKNINNNKVIAIGETGLDFFKSKQKKKNQIKLFEYHLHLS
EEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEHEEEEHH
KKKKKPIIIHNRNSDKELLNILISKKEKLYSGIIHSFTGKKKFARKLLDLGFYISFSGII
HCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEE
TFKKSEKLREILKFIPLNRLLIETDSPYLSPEPYRGKKNQPSFLYFIAKCIQKYIKIDFL
EECCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
KFIKILKKNFLRLFQLKNNIYFLQ
HHHHHHHHHHHHHHHHHCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]