Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
---|---|
Accession | NC_008513 |
Length | 416,380 |
Click here to switch to the map view.
The map label for this gene is grpE [C]
Identifier: 116515060
GI number: 116515060
Start: 136846
End: 137358
Strand: Reverse
Name: grpE [C]
Synonym: BCc_119
Alternate gene names: 116515060
Gene position: 137358-136846 (Counterclockwise)
Preceding gene: 116515062
Following gene: 116515058
Centisome position: 32.99
GC content: 11.89
Gene sequence:
>513_bases ATGATAGAAAAAAATGAAAAAAAAAAGATTTTAAAAAAAGATAAAAAAAAAAAAATTACTATAAAAAAAATAGAAAAAAA AATTTCTCTTTTAATAAAAGAAAAAAAAAATATTCGTTTAAGACATTATGCTAATATAGAAAATATTATAAAAAAAAATG CATCTGAAATAAAGTTTATTAAAACTAATATGTTTGAAAATTTTTTAAATTCTATATTTTCAATAATTAATAAAATTGAT CTATTAACAATAAATTTAAAAAATATGTCTTCTACACAAAAATCTTTATTTGAAGGAATAAAATTAACAAAAAATATATT TGAAAAAAATTTAAAAAATTGGAAAATTAAAAAAATAAACAAAATAAATATACCATTTAATGAAAAAATACATAAAATTA AAAAAAATGAAAAAAAAAATTCTATATCAAAAAACAAAAAAATAAAAAATATTATAAAACCTGGATATATTTTAAAAAAT AAAGTTATAAAAAAAGCAATTGTTTTATTGTAA
Upstream 100 bases:
>100_bases ATAATGTTATTGTAATTATCGAAAAATTTTTCTAAAAAAATCATTTTAAAAAAAATTTTAATTATTTTTTAATTTATAAA ATTCTATATAGGATTTAAAA
Downstream 100 bases:
>100_bases AAATAAAATTTTTAGTTAAAATGTTTCATAAAATTTTTATTCAAATAAATCTAAAAACCAATTAATTGGTTTTTTTTTCT GATTTTGTAATAAAACATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 170
Protein sequence:
>170_residues MIEKNEKKKILKKDKKKKITIKKIEKKISLLIKEKKNIRLRHYANIENIIKKNASEIKFIKTNMFENFLNSIFSIINKID LLTINLKNMSSTQKSLFEGIKLTKNIFEKNLKNWKIKKINKINIPFNEKIHKIKKNEKKNSISKNKKIKNIIKPGYILKN KVIKKAIVLL
Sequences:
>Translated_170_residues MIEKNEKKKILKKDKKKKITIKKIEKKISLLIKEKKNIRLRHYANIENIIKKNASEIKFIKTNMFENFLNSIFSIINKID LLTINLKNMSSTQKSLFEGIKLTKNIFEKNLKNWKIKKINKINIPFNEKIHKIKKNEKKNSISKNKKIKNIIKPGYILKN KVIKKAIVLL >Mature_170_residues MIEKNEKKKILKKDKKKKITIKKIEKKISLLIKEKKNIRLRHYANIENIIKKNASEIKFIKTNMFENFLNSIFSIINKID LLTINLKNMSSTQKSLFEGIKLTKNIFEKNLKNWKIKKINKINIPFNEKIHKIKKNEKKNSISKNKKIKNIIKPGYILKN KVIKKAIVLL
Specific function: Participates Actively In The Response To Hyperosmotic And Heat Shock By Preventing The Aggregation Of Stress-Denatured Proteins, In Association With Dnak And Grpe. It Is The Nucleotide Exchange Factor For Dnak And May Function As A Thermosensor. Unfolded
COG id: COG0576
COG function: function code O; Molecular chaperone GrpE (heat shock protein)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 2359 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20182; Mature: 20182
Theoretical pI: Translated: 11.18; Mature: 11.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEKNEKKKILKKDKKKKITIKKIEKKISLLIKEKKNIRLRHYANIENIIKKNASEIKFI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHCCHHHHHHH KTNMFENFLNSIFSIINKIDLLTINLKNMSSTQKSLFEGIKLTKNIFEKNLKNWKIKKIN HHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE KINIPFNEKIHKIKKNEKKNSISKNKKIKNIIKPGYILKNKVIKKAIVLL EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MIEKNEKKKILKKDKKKKITIKKIEKKISLLIKEKKNIRLRHYANIENIIKKNASEIKFI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHCCHHHHHHH KTNMFENFLNSIFSIINKIDLLTINLKNMSSTQKSLFEGIKLTKNIFEKNLKNWKIKKIN HHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE KINIPFNEKIHKIKKNEKKNSISKNKKIKNIIKPGYILKNKVIKKAIVLL EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA