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The map label for this gene is yraL [H]

Identifier: 116514997

GI number: 116514997

Start: 59958

End: 60785

Strand: Reverse

Name: yraL [H]

Synonym: BCc_055

Alternate gene names: 116514997

Gene position: 60785-59958 (Counterclockwise)

Preceding gene: 116515002

Following gene: 116514996

Centisome position: 14.6

GC content: 18.6

Gene sequence:

>828_bases
ATTGTACCTACACCTATTGGCAATATATTAGATATAACATATCGATCTATTAATATTTTAAAAAAAGTAGATTTTATTAT
TTCTGAAAATAAAAAATATACTTCTATTTTATTGAAAAAATTTTTTATTATAAAAAAAATGTTTTCATATCACTTAGTTA
ATGAAAAATTAAAAACAAAAAAATATATTAAAATGTTAAAAGATGGAAAAAATCTTGCTCTAGTTTCAAATGCTGGAACT
CCTTTGATTAATGATCCTGGATATTTATTAGTCAAACAAGCATATTCTAATAATATTAGAGTTGTTCCGTTACCGGGAGC
ATGTGCTGCAATTTCTGCATTAATTTCTTCAGGTTTAAAAACTAATCGATTTTGTTATGAAGGATTTTTACCAAAAAAAA
AAAAAAAACTAAAAAAAAAAATATACTCTTTAAATAATGAAAAACGTACAACTATTCTATATGAATCACCTAAAAGATTA
ATTAATACAATTAAATTAATAAAAAAAATTATGGGTCCTAAAAAAAAAATATCAATCTCTAAAGAATTAACAAAAAAATG
GGAAAAAATAAAAACCGGGACAACTCAAAAATTTTTAAAAAAAATAAAAAAAAATAATTATTGGAAAAAAGGAGAAATTT
TAATAATAATTAATGGTATTAAAAATAAAAAAAAAAAAATTTCTTCAAAAATATTACAAACATTATCAATATTAAAAAAA
GAAATGAGTTTATCAAAAGCAATTAAAATAACTGCAAAAATATGTAGATTTAATAAAAATATATTATATAATAAAATTAT
TAAAAAAAAAAATGATAAAGTTAGTTGA

Upstream 100 bases:

>100_bases
TTGAATTAATTATTAATTAATATTCTCATATTATATTCTTAACAATAATAAAGATTTATAAAATTATGTATAAAAAAAAA
ATAATTTAGGATTATTATAC

Downstream 100 bases:

>100_bases
ACAGTCGCTATTTAATATTTCTATATTAAATAGAGGAAAGTCCGGGCTCCGTAAGGCAAGACGCCAGATAACGTCTGGGA
AGAGAAATCTTACGACTAGT

Product: YraL

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MVPTPIGNILDITYRSINILKKVDFIISENKKYTSILLKKFFIIKKMFSYHLVNEKLKTKKYIKMLKDGKNLALVSNAGT
PLINDPGYLLVKQAYSNNIRVVPLPGACAAISALISSGLKTNRFCYEGFLPKKKKKLKKKIYSLNNEKRTTILYESPKRL
INTIKLIKKIMGPKKKISISKELTKKWEKIKTGTTQKFLKKIKKNNYWKKGEILIIINGIKNKKKKISSKILQTLSILKK
EMSLSKAIKITAKICRFNKNILYNKIIKKKNDKVS

Sequences:

>Translated_275_residues
MVPTPIGNILDITYRSINILKKVDFIISENKKYTSILLKKFFIIKKMFSYHLVNEKLKTKKYIKMLKDGKNLALVSNAGT
PLINDPGYLLVKQAYSNNIRVVPLPGACAAISALISSGLKTNRFCYEGFLPKKKKKLKKKIYSLNNEKRTTILYESPKRL
INTIKLIKKIMGPKKKISISKELTKKWEKIKTGTTQKFLKKIKKNNYWKKGEILIIINGIKNKKKKISSKILQTLSILKK
EMSLSKAIKITAKICRFNKNILYNKIIKKKNDKVS
>Mature_275_residues
MVPTPIGNILDITYRSINILKKVDFIISENKKYTSILLKKFFIIKKMFSYHLVNEKLKTKKYIKMLKDGKNLALVSNAGT
PLINDPGYLLVKQAYSNNIRVVPLPGACAAISALISSGLKTNRFCYEGFLPKKKKKLKKKIYSLNNEKRTTILYESPKRL
INTIKLIKKIMGPKKKISISKELTKKWEKIKTGTTQKFLKKIKKNNYWKKGEILIIINGIKNKKKKISSKILQTLSILKK
EMSLSKAIKITAKICRFNKNILYNKIIKKKNDKVS

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]

Homologues:

Organism=Escherichia coli, GI1789535, Length=271, Percent_Identity=41.6974169741697, Blast_Score=249, Evalue=2e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR008189
- InterPro:   IPR018063 [H]

Pfam domain/function: PF00590 TP_methylase [H]

EC number: NA

Molecular weight: Translated: 31668; Mature: 31668

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: PS01296 UPF0011

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPTPIGNILDITYRSINILKKVDFIISENKKYTSILLKKFFIIKKMFSYHLVNEKLKTK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYIKMLKDGKNLALVSNAGTPLINDPGYLLVKQAYSNNIRVVPLPGACAAISALISSGLK
HHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEHHCCCEEEEECCCHHHHHHHHHHCCCC
TNRFCYEGFLPKKKKKLKKKIYSLNNEKRTTILYESPKRLINTIKLIKKIMGPKKKISIS
CCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHEEHH
KELTKKWEKIKTGTTQKFLKKIKKNNYWKKGEILIIINGIKNKKKKISSKILQTLSILKK
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
EMSLSKAIKITAKICRFNKNILYNKIIKKKNDKVS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVPTPIGNILDITYRSINILKKVDFIISENKKYTSILLKKFFIIKKMFSYHLVNEKLKTK
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KYIKMLKDGKNLALVSNAGTPLINDPGYLLVKQAYSNNIRVVPLPGACAAISALISSGLK
HHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEEHHCCCEEEEECCCHHHHHHHHHHCCCC
TNRFCYEGFLPKKKKKLKKKIYSLNNEKRTTILYESPKRLINTIKLIKKIMGPKKKISIS
CCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHEEHH
KELTKKWEKIKTGTTQKFLKKIKKNNYWKKGEILIIINGIKNKKKKISSKILQTLSILKK
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
EMSLSKAIKITAKICRFNKNILYNKIIKKKNDKVS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]