Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
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Accession | NC_008378 |
Length | 870,021 |
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The map label for this gene is 116249027
Identifier: 116249027
GI number: 116249027
Start: 387572
End: 388066
Strand: Reverse
Name: 116249027
Synonym: pRL120358
Alternate gene names: NA
Gene position: 388066-387572 (Counterclockwise)
Preceding gene: 116249030
Following gene: 116249026
Centisome position: 44.6
GC content: 61.62
Gene sequence:
>495_bases ATGGACAAGCCCTGGAAGATCAGCCGCGGACCGATTGCGGCAACCGAGCTCGACGTGGAGAAGGCAAACGCGATCAATGT GCTGTTGATGCGGCCGGTCGGCGTCCTTCCGGCCAAGGCGGGAGATCCTGTCCTTCCGTTTGCCGTCGGCCTTTTCAACG AACTCCGCCCGCTCCTAAAGCCCGATGCCGGCGTCACCACGCTCAGGCGAGCGACCGCGGCCTATGTCCACTGCCGGCGC TACTATTTCGCCAGCGCCCAACCCGATTCCATGCGCCATAGTCTTGACGGTGAACCTGTCGAACCACTGTCGTCCGAAGA CCGGCTGGTCGCGCAAAAACGCTTCCTGAGCCTCAAGCAGACCACCGGTAAGACAGACGCGCCCGAGCAGACAGCACCGG TCCTCGCTCCCCTGTTGAGCAAAAGCGAACAGATCCGCGCAGCTCTCCTCGGCAAAAAAGGAACGCCGCCAGCTAGTCAC CTGGAACCAAAGTAA
Upstream 100 bases:
>100_bases CCTGCTTGCGGTGGAACCGACGATGTGCGACTTCCGTTACTCGCCCTGTCCGTCAAGATACCATCACAGTCGATCGCTAT GGACGTTACATGGAGGACGC
Downstream 100 bases:
>100_bases GCTTCATTTTGTTCGGCTTCTGTCACAAGAGCAGGAGTTTGATCGATGGTTGGCAGGCAGGCGGACCTCGTCGTTCTGAG CGACGCGGACAGAAATTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MDKPWKISRGPIAATELDVEKANAINVLLMRPVGVLPAKAGDPVLPFAVGLFNELRPLLKPDAGVTTLRRATAAYVHCRR YYFASAQPDSMRHSLDGEPVEPLSSEDRLVAQKRFLSLKQTTGKTDAPEQTAPVLAPLLSKSEQIRAALLGKKGTPPASH LEPK
Sequences:
>Translated_164_residues MDKPWKISRGPIAATELDVEKANAINVLLMRPVGVLPAKAGDPVLPFAVGLFNELRPLLKPDAGVTTLRRATAAYVHCRR YYFASAQPDSMRHSLDGEPVEPLSSEDRLVAQKRFLSLKQTTGKTDAPEQTAPVLAPLLSKSEQIRAALLGKKGTPPASH LEPK >Mature_164_residues MDKPWKISRGPIAATELDVEKANAINVLLMRPVGVLPAKAGDPVLPFAVGLFNELRPLLKPDAGVTTLRRATAAYVHCRR YYFASAQPDSMRHSLDGEPVEPLSSEDRLVAQKRFLSLKQTTGKTDAPEQTAPVLAPLLSKSEQIRAALLGKKGTPPASH LEPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17799; Mature: 17799
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPWKISRGPIAATELDVEKANAINVLLMRPVGVLPAKAGDPVLPFAVGLFNELRPLLK CCCCCCCCCCCCEEHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHC PDAGVTTLRRATAAYVHCRRYYFASAQPDSMRHSLDGEPVEPLSSEDRLVAQKRFLSLKQ CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH TTGKTDAPEQTAPVLAPLLSKSEQIRAALLGKKGTPPASHLEPK HCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MDKPWKISRGPIAATELDVEKANAINVLLMRPVGVLPAKAGDPVLPFAVGLFNELRPLLK CCCCCCCCCCCCEEHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHC PDAGVTTLRRATAAYVHCRRYYFASAQPDSMRHSLDGEPVEPLSSEDRLVAQKRFLSLKQ CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH TTGKTDAPEQTAPVLAPLLSKSEQIRAALLGKKGTPPASHLEPK HCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA