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The map label for this gene is ygbI [H]

Identifier: 116248878

GI number: 116248878

Start: 218441

End: 219217

Strand: Direct

Name: ygbI [H]

Synonym: pRL120208

Alternate gene names: 116248878

Gene position: 218441-219217 (Clockwise)

Preceding gene: 116248877

Following gene: 116248879

Centisome position: 25.11

GC content: 61.13

Gene sequence:

>777_bases
ATGAGGCGGGAAGAGCGGCAGCAGTTGATCGTCAACCTGCTCGTCGAAAACAAGACCGTCGATCTCGACGACCTTGCCGA
TCGCTTCACCGTGTCAAAGATGACGATCCATCGCGATCTCGACGATCTCGAGCAGGCAGGCGTCCTGCGCAAGGTTCGCG
GCGGCGCGACCATTGACGCCGGAACGCAGTTCGAAAGCGACTTTCGCATTCGCGAACGCCAGGGCAACGAAGCCAAGCTG
GCCATGGCTGAGACCGCGCTGGAACTGGTCGAGCCGGGGATGACGGTGATGGTAAACGATGGCTCGATGGCGGCCGTGCT
CGGAGAAATGCTGCTGCAGAAGCGGCCGCTGACCTTGATCACCAACAATGCGGCGATCATGGAGCGGCTGAAAGGCGAAA
CCGGCATCACGCTGATCGCGCTCGGCGGCATCTATTCGGCCAAATTCAACGCCTATCTCGGCGTCGTCACCGAGGAGGCC
CTGTCGCGGCTGAGGGCCGACATCGCCTTCATTTCGACGCCCGCCGTCAGCGGCGGGCTCGCCTATCACATGGACGATAA
CGTCGTGCGCGCCAAACGGGCGATGATCGCGTCGTCGACCAGGACCTGCCTTCTGGTCAACCATCAGCGCATCGGCCACA
CTGCCCTGCATGTCATGGCGGATCTGGCTGATTTCGACACCGTTATCACCGACAGCGCACCGGATGCTGCTGTTCTGGAG
GAATTCGAGCAGGCGGGCATTACGCTCACCATTGCATCAACGCAGGATCCGACATGA

Upstream 100 bases:

>100_bases
CTATGGAAACACAACAATATTTGATCGCAAAATAACATAATAAATGTTGATTATCACGCATATTCCGTTATCTTAACATT
AAACGAGGGTGGAGACCGGG

Downstream 100 bases:

>100_bases
CCGAAAAGCCGCGCTTCTGGATTGGCACCAGCTGGAAGATGAACAAGACGCTTACTGAAGCCGAGCAATTCGCGCGCGGT
CTCGAAGCCGCCGATGGCGC

Product: deoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MRREERQQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEQAGVLRKVRGGATIDAGTQFESDFRIRERQGNEAKL
AMAETALELVEPGMTVMVNDGSMAAVLGEMLLQKRPLTLITNNAAIMERLKGETGITLIALGGIYSAKFNAYLGVVTEEA
LSRLRADIAFISTPAVSGGLAYHMDDNVVRAKRAMIASSTRTCLLVNHQRIGHTALHVMADLADFDTVITDSAPDAAVLE
EFEQAGITLTIASTQDPT

Sequences:

>Translated_258_residues
MRREERQQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEQAGVLRKVRGGATIDAGTQFESDFRIRERQGNEAKL
AMAETALELVEPGMTVMVNDGSMAAVLGEMLLQKRPLTLITNNAAIMERLKGETGITLIALGGIYSAKFNAYLGVVTEEA
LSRLRADIAFISTPAVSGGLAYHMDDNVVRAKRAMIASSTRTCLLVNHQRIGHTALHVMADLADFDTVITDSAPDAAVLE
EFEQAGITLTIASTQDPT
>Mature_258_residues
MRREERQQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEQAGVLRKVRGGATIDAGTQFESDFRIRERQGNEAKL
AMAETALELVEPGMTVMVNDGSMAAVLGEMLLQKRPLTLITNNAAIMERLKGETGITLIALGGIYSAKFNAYLGVVTEEA
LSRLRADIAFISTPAVSGGLAYHMDDNVVRAKRAMIASSTRTCLLVNHQRIGHTALHVMADLADFDTVITDSAPDAAVLE
EFEQAGITLTIASTQDPT

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=235, Percent_Identity=30.2127659574468, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789829, Length=253, Percent_Identity=25.6916996047431, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788069, Length=242, Percent_Identity=29.7520661157025, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787540, Length=252, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790635, Length=252, Percent_Identity=26.1904761904762, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=25.0996015936255, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=24.4094488188976, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082344, Length=247, Percent_Identity=23.8866396761134, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789170, Length=235, Percent_Identity=28.5106382978723, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787063, Length=239, Percent_Identity=25.9414225941423, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28115; Mature: 28115

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRREERQQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEQAGVLRKVRGGATIDA
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECC
GTQFESDFRIRERQGNEAKLAMAETALELVEPGMTVMVNDGSMAAVLGEMLLQKRPLTLI
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEE
TNNAAIMERLKGETGITLIALGGIYSAKFNAYLGVVTEEALSRLRADIAFISTPAVSGGL
ECCHHHHHHHCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCE
AYHMDDNVVRAKRAMIASSTRTCLLVNHQRIGHTALHVMADLADFDTVITDSAPDAAVLE
EEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
EFEQAGITLTIASTQDPT
HHHHCCEEEEEECCCCCC
>Mature Secondary Structure
MRREERQQLIVNLLVENKTVDLDDLADRFTVSKMTIHRDLDDLEQAGVLRKVRGGATIDA
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECC
GTQFESDFRIRERQGNEAKLAMAETALELVEPGMTVMVNDGSMAAVLGEMLLQKRPLTLI
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCEEE
TNNAAIMERLKGETGITLIALGGIYSAKFNAYLGVVTEEALSRLRADIAFISTPAVSGGL
ECCHHHHHHHCCCCCEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCE
AYHMDDNVVRAKRAMIASSTRTCLLVNHQRIGHTALHVMADLADFDTVITDSAPDAAVLE
EEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
EFEQAGITLTIASTQDPT
HHHHCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]